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Report for CCDS1662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1662.1 Public Homo sapiens 2 ITGB1BP1 24 110 108 CCDS HistoryNCBI Gene:9270Re-query CCDS DB by CCDS ID:1662.1Re-query CCDS DB by GeneID:9270See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355346.9 ENSP00000347504.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355346.9Link to Ensembl Protein Viewer:ENSP00000347504.4Re-query CCDS DB by Nucleotide ID:ENST00000355346Re-query CCDS DB by Protein ID:ENSP00000347504
Original member Current member EBI ENST00000360635.7 ENSP00000353850.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360635.7Link to Ensembl Protein Viewer:ENSP00000353850.3Re-query CCDS DB by Nucleotide ID:ENST00000360635Re-query CCDS DB by Protein ID:ENSP00000353850
Original member Current member NCBI NM_001319066.2 NP_001305995.1 Accepted alive Link to Nucleotide Sequence:NM_001319066.2Link to Protein Sequence:NP_001305995.1Re-query CCDS DB by Nucleotide ID:NM_001319066Re-query CCDS DB by Protein ID:NP_001305995Link to BLAST:NP_001305995.1
Original member Current member NCBI NM_001319067.2 NP_001305996.1 Accepted alive Link to Nucleotide Sequence:NM_001319067.2Link to Protein Sequence:NP_001305996.1Re-query CCDS DB by Nucleotide ID:NM_001319067Re-query CCDS DB by Protein ID:NP_001305996Link to BLAST:NP_001305996.1
Original member Current member NCBI NM_001319068.2 NP_001305997.1 Accepted alive Link to Nucleotide Sequence:NM_001319068.2Link to Protein Sequence:NP_001305997.1Re-query CCDS DB by Nucleotide ID:NM_001319068Re-query CCDS DB by Protein ID:NP_001305997Link to BLAST:NP_001305997.1
Original member Current member NCBI NM_001369744.1 NP_001356673.1 Accepted alive Link to Nucleotide Sequence:NM_001369744.1Link to Protein Sequence:NP_001356673.1Re-query CCDS DB by Nucleotide ID:NM_001369744Re-query CCDS DB by Protein ID:NP_001356673Link to BLAST:NP_001356673.1
Original member Current member NCBI NM_001369745.1 NP_001356674.1 Accepted alive Link to Nucleotide Sequence:NM_001369745.1Link to Protein Sequence:NP_001356674.1Re-query CCDS DB by Nucleotide ID:NM_001369745Re-query CCDS DB by Protein ID:NP_001356674Link to BLAST:NP_001356674.1
Original member Current member NCBI NM_001369746.1 NP_001356675.1 Accepted alive Link to Nucleotide Sequence:NM_001369746.1Link to Protein Sequence:NP_001356675.1Re-query CCDS DB by Nucleotide ID:NM_001369746Re-query CCDS DB by Protein ID:NP_001356675Link to BLAST:NP_001356675.1
Original member Current member NCBI NM_001369748.1 NP_001356677.1 Accepted alive Link to Nucleotide Sequence:NM_001369748.1Link to Protein Sequence:NP_001356677.1Re-query CCDS DB by Nucleotide ID:NM_001369748Re-query CCDS DB by Protein ID:NP_001356677Link to BLAST:NP_001356677.1
Original member Current member NCBI NM_001369749.2 NP_001356678.1 Accepted alive Link to Nucleotide Sequence:NM_001369749.2Link to Protein Sequence:NP_001356678.1Re-query CCDS DB by Nucleotide ID:NM_001369749Re-query CCDS DB by Protein ID:NP_001356678Link to BLAST:NP_001356678.1
Original member Current member NCBI NM_004763.5 NP_004754.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004763.5Link to Protein Sequence:NP_004754.1Re-query CCDS DB by Nucleotide ID:NM_004763Re-query CCDS DB by Protein ID:NP_004754Link to BLAST:NP_004754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305995.1 200 O14713-1 200 100% 0 0
NP_001305996.1 200 O14713-1 200 100% 0 0
NP_001305997.1 200 O14713-1 200 100% 0 0
NP_001356673.1 200 O14713-1 200 100% 0 0
NP_001356674.1 200 O14713-1 200 100% 0 0
NP_001356675.1 200 O14713-1 200 100% 0 0
NP_001356677.1 200 O14713-1 200 100% 0 0
NP_001356678.1 200 O14713-1 200 100% 0 0
NP_004754.1 200 O14713-1 200 100% 0 0

Chromosomal Locations for CCDS 1662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9406834 9406905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9407449 9407598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9408113 9408205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9412269 9412405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9414178 9414256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9418626 9418697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGTTTCGCAAGGGCAAAAAACGACACAGTAGTAGCAGTTCCCAAAGTAGCGAAATCAGTACTAAGAGCA
AGTCTGTGGATTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCAC
CAAAAGCTCAGGACAAAGCAACAATAATTCAGATACCTGTGCAGAATTTCGAATAAAATATGTTGGTGCC
ATTGAGAAACTGAAACTCTCCGAGGGAAAAGGCCTTGAAGGGCCATTAGACCTGATAAATTATATAGACG
TTGCCCAGCAAGATGGAAAGTTGCCTTTTGTTCCTCCGGAGGAAGAATTTATTATGGGAGTTTCCAAGTA
TGGCATAAAAGTATCAACATCAGATCAATATGATGTTTTGCACAGGCATGCTCTCTACTTAATAATCCGG
ATGGTGTGTTACGATGACGGTCTGGGGGCGGGAAAAAGCTTACTGGCTCTGAAGACCACAGATGCAAGCA
ATGAGGAATACAGCCTGTGGGTTTATCAGTGCAACAGCCTGGAACAAGCACAAGCCATTTGCAAGGTTTT
ATCCACCGCTTTTGACTCTGTATTAACATCTGAGAAACCCTGA

Translation (200 aa):
MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGA
IEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIR
MVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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