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Report for CCDS287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
287.1 Public Homo sapiens 1 PIGV 24 110 108 CCDS HistoryNCBI Gene:55650Re-query CCDS DB by CCDS ID:287.1Re-query CCDS DB by GeneID:55650See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000078527.9 ENSP00000078527.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000078527.9Link to Ensembl Protein Viewer:ENSP00000078527.4Re-query CCDS DB by Nucleotide ID:ENST00000078527Re-query CCDS DB by Protein ID:ENSP00000078527
Original member Current member EBI ENST00000374145.6 ENSP00000363260.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374145.6Link to Ensembl Protein Viewer:ENSP00000363260.1Re-query CCDS DB by Nucleotide ID:ENST00000374145Re-query CCDS DB by Protein ID:ENSP00000363260
Original member Current member EBI ENST00000455364.2 ENSP00000406080.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455364.2Link to Ensembl Protein Viewer:ENSP00000406080.2Re-query CCDS DB by Nucleotide ID:ENST00000455364Re-query CCDS DB by Protein ID:ENSP00000406080
Original member Current member EBI ENST00000674222.1 ENSP00000501335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674222.1Link to Ensembl Protein Viewer:ENSP00000501335.1Re-query CCDS DB by Nucleotide ID:ENST00000674222Re-query CCDS DB by Protein ID:ENSP00000501335
Original member Current member EBI ENST00000674202.1 ENSP00000501479.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674202.1Link to Ensembl Protein Viewer:ENSP00000501479.1Re-query CCDS DB by Nucleotide ID:ENST00000674202Re-query CCDS DB by Protein ID:ENSP00000501479
Original member Current member EBI ENST00000674273.1 ENSP00000501527.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674273.1Link to Ensembl Protein Viewer:ENSP00000501527.1Re-query CCDS DB by Nucleotide ID:ENST00000674273Re-query CCDS DB by Protein ID:ENSP00000501527
Original member Current member EBI ENST00000688522.1 ENSP00000508665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688522.1Link to Ensembl Protein Viewer:ENSP00000508665.1Re-query CCDS DB by Nucleotide ID:ENST00000688522Re-query CCDS DB by Protein ID:ENSP00000508665
Original member Current member EBI ENST00000691135.1 ENSP00000510357.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691135.1Link to Ensembl Protein Viewer:ENSP00000510357.1Re-query CCDS DB by Nucleotide ID:ENST00000691135Re-query CCDS DB by Protein ID:ENSP00000510357
Original member Current member NCBI NM_001202554.2 NP_001189483.1 Accepted alive Link to Nucleotide Sequence:NM_001202554.2Link to Protein Sequence:NP_001189483.1Re-query CCDS DB by Nucleotide ID:NM_001202554Re-query CCDS DB by Protein ID:NP_001189483Link to BLAST:NP_001189483.1
Original member Current member NCBI NM_001374478.1 NP_001361407.1 Accepted alive Link to Nucleotide Sequence:NM_001374478.1Link to Protein Sequence:NP_001361407.1Re-query CCDS DB by Nucleotide ID:NM_001374478Re-query CCDS DB by Protein ID:NP_001361407Link to BLAST:NP_001361407.1
Original member Current member NCBI NM_001374480.1 NP_001361409.1 Accepted alive Link to Nucleotide Sequence:NM_001374480.1Link to Protein Sequence:NP_001361409.1Re-query CCDS DB by Nucleotide ID:NM_001374480Re-query CCDS DB by Protein ID:NP_001361409Link to BLAST:NP_001361409.1
Original member Current member NCBI NM_001374481.1 NP_001361410.1 Accepted alive Link to Nucleotide Sequence:NM_001374481.1Link to Protein Sequence:NP_001361410.1Re-query CCDS DB by Nucleotide ID:NM_001374481Re-query CCDS DB by Protein ID:NP_001361410Link to BLAST:NP_001361410.1
Original member Current member NCBI NM_001374482.1 NP_001361411.1 Accepted alive Link to Nucleotide Sequence:NM_001374482.1Link to Protein Sequence:NP_001361411.1Re-query CCDS DB by Nucleotide ID:NM_001374482Re-query CCDS DB by Protein ID:NP_001361411Link to BLAST:NP_001361411.1
Original member Current member NCBI NM_017837.4 NP_060307.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017837.4Link to Protein Sequence:NP_060307.2Re-query CCDS DB by Nucleotide ID:NM_017837Re-query CCDS DB by Protein ID:NP_060307Link to BLAST:NP_060307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189483.1 493 Q9NUD9 493 100% 0 0
NP_001361407.1 493 Q9NUD9 493 100% 0 0
NP_001361409.1 493 Q9NUD9 493 100% 0 0
NP_001361410.1 493 Q9NUD9 493 100% 0 0
NP_001361411.1 493 Q9NUD9 493 100% 0 0
NP_060307.2 493 Q9NUD9 493 100% 0 0

Chromosomal Locations for CCDS 287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26790816 26790893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26794113 26795234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26797563 26797844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTGGCCCCAGGACCCATCCCGGAAGGAGGTGCTGAGGTTTGCAGTCAGCTGCCGTATCCTGACTCTGA
TGCTGCAGGCCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTCGCCTGGC
CCCCTCAGGCTTTGTGGACCAACTCGTGGAAGGTCTTCTGGGCGGCCTGTCTCACTGGGATGCTGAACAC
TTCTTGTTCATTGCTGAGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTTCCTGGTTTCCCCTTGG
CCCTGCTGGTGGGGACTGAACTGTTGAGACCCTTACGGGGGTTACTGAGTCTACGCAGTTGCCTGCTGAT
TTCGGTAGCATCACTCAATTTCTTGTTCTTCATGTTGGCTGCAGTTGCACTTCATGACCTGGGTTGTCTG
GTTTTGCACTGTCCCCACCAGTCCTTTTATGCAGCTCTGCTTTTCTGTCTCAGCCCTGCCAATGTCTTCC
TGGCAGCTGGTTACTCAGAAGCTTTGTTTGCCCTCCTGACATTCAGTGCCATGGGGCAGCTGGAGAGGGG
CCGAGTCTGGACTAGTGTACTCCTCTTTGCCTTTGCCACTGGGGTACGCTCCAACGGGCTGGTCAGTGTT
GGCTTCCTCATGCATTCTCAATGCCAAGGCTTTTTCTCTTCTCTAACGATGCTGAATCCTCTGAGACAGC
TCTTTAAGCTGATGGCCTCTCTGTTTCTGTCGGTGTTCACACTTGGCCTTCCCTTTGCCCTCTTTCAGTA
TTATGCCTACACCCAATTCTGTCTGCCAGGCTCAGCCCGCCCCATTCCTGAGCCTTTGGTACAGTTAGCT
GTAGACAAGGGCTACCGGATTGCAGAGGGAAATGAACCGCCTTGGTGCTTCTGGGATGTTCCACTAATAT
ACAGCTATATCCAGGATGTCTACTGGAATGTTGGCTTTTTGAAATACTATGAGCTCAAGCAGGTGCCCAA
TTTTCTACTGGCTGCACCAGTGGCTATACTGGTTGCCTGGGCAACTTGGACATACGTGACCACTCACCCT
TGGCTCTGCCTTACACTTGGGCTGCAAAGGAGCAAGAACAATAAGACCCTAGAGAAGCCCGATCTTGGAT
TCCTCAGTCCTCAGGTGTTTGTGTACGTGGTCCACGCTGCAGTGCTGCTGCTGTTTGGAGGTCTGTGCAT
GCATGTTCAGGTTCTCACCAGGTTTTTGGGCTCCTCCACTCCTATTATGTACTGGTTTCCAGCTCACTTG
CTTCAGGATCAAGAGCCGCTGTTGAGATCCTTAAAGACTGTGCCTTGGAAGCCTCTTGCAGAGGACTCCC
CACCAGGACAAAAGGTCCCCAGAAATCCTATCATGGGACTTTTGTATCACTGGAAAACCTGTTCTCCAGT
CACACGATACATTCTAGGCTACTTCCTGACTTACTGGCTCCTGGGACTACTCCTACATTGCAACTTCCTG
CCTTGGACATGA

Translation (493 aa):
MWPQDPSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLAPSGFVDQLVEGLLGGLSHWDAEH
FLFIAEHGYLYEHNFAFFPGFPLALLVGTELLRPLRGLLSLRSCLLISVASLNFLFFMLAAVALHDLGCL
VLHCPHQSFYAALLFCLSPANVFLAAGYSEALFALLTFSAMGQLERGRVWTSVLLFAFATGVRSNGLVSV
GFLMHSQCQGFFSSLTMLNPLRQLFKLMASLFLSVFTLGLPFALFQYYAYTQFCLPGSARPIPEPLVQLA
VDKGYRIAEGNEPPWCFWDVPLIYSYIQDVYWNVGFLKYYELKQVPNFLLAAPVAILVAWATWTYVTTHP
WLCLTLGLQRSKNNKTLEKPDLGFLSPQVFVYVVHAAVLLLFGGLCMHVQVLTRFLGSSTPIMYWFPAHL
LQDQEPLLRSLKTVPWKPLAEDSPPGQKVPRNPIMGLLYHWKTCSPVTRYILGYFLTYWLLGLLLHCNFL
PWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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