NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53792.1 Public Homo sapiens 12 SLC11A2 24 110 108 CCDS HistoryNCBI Gene:4891Re-query CCDS DB by CCDS ID:53792.1Re-query CCDS DB by GeneID:4891See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547198.5 ENSP00000446769.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547198.5Link to Ensembl Protein Viewer:ENSP00000446769.1Re-query CCDS DB by Nucleotide ID:ENST00000547198Re-query CCDS DB by Protein ID:ENSP00000446769
Original member Current member EBI ENST00000546636.5 ENSP00000449008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546636.5Link to Ensembl Protein Viewer:ENSP00000449008.1Re-query CCDS DB by Nucleotide ID:ENST00000546636Re-query CCDS DB by Protein ID:ENSP00000449008
Original member Current member EBI ENST00000644495.1 ENSP00000494107.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644495.1Link to Ensembl Protein Viewer:ENSP00000494107.1Re-query CCDS DB by Nucleotide ID:ENST00000644495Re-query CCDS DB by Protein ID:ENSP00000494107
Original member Current member NCBI NM_001174126.2 NP_001167597.1 Accepted alive Link to Nucleotide Sequence:NM_001174126.2Link to Protein Sequence:NP_001167597.1Re-query CCDS DB by Nucleotide ID:NM_001174126Re-query CCDS DB by Protein ID:NP_001167597Link to BLAST:NP_001167597.1
Original member Current member NCBI NM_001174127.2 NP_001167598.1 Accepted alive Link to Nucleotide Sequence:NM_001174127.2Link to Protein Sequence:NP_001167598.1Re-query CCDS DB by Nucleotide ID:NM_001174127Re-query CCDS DB by Protein ID:NP_001167598Link to BLAST:NP_001167598.1
Original member NCBI NM_001379447.1 NP_001366376.1 Updated not alive Link to Nucleotide Sequence:NM_001379447.1Link to Protein Sequence:NP_001366376.1Re-query CCDS DB by Nucleotide ID:NM_001379447Re-query CCDS DB by Protein ID:NP_001366376
Current member NCBI NM_001379447.2 NP_001366376.1 Accepted alive Link to Nucleotide Sequence:NM_001379447.2Link to Protein Sequence:NP_001366376.1Re-query CCDS DB by Nucleotide ID:NM_001379447Re-query CCDS DB by Protein ID:NP_001366376Link to BLAST:NP_001366376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167597.1 568 P49281-1 568 100% 0 0
NP_001167598.1 568 P49281-1 568 100% 0 0
NP_001366376.1 568 P49281-1 568 100% 0 0

Chromosomal Locations for CCDS 53792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50981726 50981803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50988382 50988435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50990795 50990948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50991599 50991672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50992190 50992339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50992810 50992929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50994544 50994630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50995629 50995787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50996817 50996972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50999174 50999241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50999345 50999415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51000313 51000419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51004788 51004907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51005311 51005436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51008476 51008624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51010695 51010728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGTGCTGGGTCCTGAACAGAAGATGTCAGATGACAGTGTTTCTGGAGATCATGGGGAGTCTGCCAGTC
TTGGTAACATCAACCCTGCCTATAGTAATCCCTCTCTTTCACAGTCCCCTGGGGACTCAGAGGAGTACTT
CGCCACTTACTTTAATGAGAAGATCTCCATTCCTGAGGAGGAGTACTCTTGTTTTAGCTTTCGTAAACTC
TGGGCTTTCACCGGACCAGGTTTTCTTATGAGCATTGCCTACCTGGATCCAGGAAATATTGAATCCGATT
TGCAGTCTGGAGCAGTGGCTGGATTTAAGTTGCTCTGGATCCTTCTGTTGGCCACCCTTGTGGGGCTGCT
GCTCCAGCGGCTTGCAGCTAGACTGGGAGTGGTTACTGGGCTGCATCTTGCTGAAGTATGTCACCGTCAG
TATCCCAAGGTCCCACGAGTCATCCTGTGGCTGATGGTGGAGTTGGCTATCATCGGCTCAGACATGCAAG
AAGTCATTGGCTCAGCCATTGCTATCAATCTTCTGTCTGTAGGAAGAATTCCTCTGTGGGGTGGCGTTCT
CATCACCATTGCAGATACTTTTGTATTTCTCTTCTTGGACAAATATGGCTTGCGGAAGCTAGAAGCATTT
TTTGGCTTTCTCATCACTATTATGGCCCTCACATTTGGATATGAGTATGTTACAGTGAAACCCAGCCAGA
GCCAGGTACTCAAGGGCATGTTCGTACCATCCTGTTCAGGCTGTCGCACTCCACAGATTGAACAGGCTGT
GGGCATCGTGGGAGCTGTCATCATGCCACACAACATGTACCTGCATTCTGCCTTAGTCAAGTCTAGACAG
GTAAACCGGAACAATAAGCAGGAAGTTCGAGAAGCCAATAAGTACTTTTTCATTGAATCCTGCATTGCAC
TCTTTGTTTCCTTCATCATCAATGTCTTTGTTGTCTCAGTCTTTGCTGAAGCATTTTTTGGGAAAACCAA
CGAGCAGGTGGTTGAAGTCTGTACAAATACCAGCAGTCCTCATGCTGGCCTCTTTCCTAAAGATAACTCG
ACACTGGCTGTGGACATCTACAAAGGGGGTGTTGTGCTGGGATGTTACTTTGGGCCTGCTGCACTCTACA
TTTGGGCAGTGGGGATCCTGGCTGCAGGACAGAGCTCCACCATGACAGGAACCTATTCTGGCCAGTTTGT
CATGGAGGGATTCCTGAACCTAAAGTGGTCACGCTTTGCCCGAGTGGTTCTGACTCGCTCTATTGCCATC
ATCCCCACTCTGCTTGTTGCTGTCTTCCAAGATGTAGAGCATCTAACAGGGATGAATGACTTTCTGAATG
TTCTACAGAGCTTACAGCTTCCCTTTGCTCTCATACCCATCCTCACATTTACGAGCTTGCGGCCAGTAAT
GAGTGACTTTGCCAATGGACTAGGCTGGCGGATTGCAGGAGGAATCTTGGTCCTTATCATCTGTTCCATC
AATATGTACTTTGTAGTGGTTTATGTCCGGGACCTAGGGCATGTGGCATTATATGTGGTGGCTGCTGTGG
TCAGCGTGGCTTATCTGGGCTTTGTGTTCTACTTGGGTTGGCAATGTTTGATTGCACTGGGCATGTCCTT
CCTGGACTGTGGGCATACGTGCCATCTGGGATTGACAGCTCAGCCTGAACTCTATCTTCTGAACACCATG
GACGCTGACTCACTTGTGTCTAGATGA

Translation (568 aa):
MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEEEYSCFSFRKL
WAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQ
YPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAF
FGFLITIMALTFGYEYVTVKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQ
VNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNS
TLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSI
NMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDCGHTCHLGLTAQPELYLLNTM
DADSLVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH