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Report for CCDS3840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3840.1 Public Homo sapiens 4 LRP2BP 24 110 108 CCDS HistoryNCBI Gene:55805Re-query CCDS DB by CCDS ID:3840.1Re-query CCDS DB by GeneID:55805See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328559.11 ENSP00000332681.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328559.11Link to Ensembl Protein Viewer:ENSP00000332681.7Re-query CCDS DB by Nucleotide ID:ENST00000328559Re-query CCDS DB by Protein ID:ENSP00000332681
Original member Current member EBI ENST00000505916.6 ENSP00000426203.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505916.6Link to Ensembl Protein Viewer:ENSP00000426203.1Re-query CCDS DB by Nucleotide ID:ENST00000505916Re-query CCDS DB by Protein ID:ENSP00000426203
Original member Current member NCBI NM_001377440.1 NP_001364369.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377440.1Link to Protein Sequence:NP_001364369.1Re-query CCDS DB by Nucleotide ID:NM_001377440Re-query CCDS DB by Protein ID:NP_001364369Link to BLAST:NP_001364369.1
Original member Current member NCBI NM_001385601.1 NP_001372530.1 Accepted alive Link to Nucleotide Sequence:NM_001385601.1Link to Protein Sequence:NP_001372530.1Re-query CCDS DB by Nucleotide ID:NM_001385601Re-query CCDS DB by Protein ID:NP_001372530Link to BLAST:NP_001372530.1
Original member Current member NCBI NM_018409.4 NP_060879.2 Accepted alive Link to Nucleotide Sequence:NM_018409.4Link to Protein Sequence:NP_060879.2Re-query CCDS DB by Nucleotide ID:NM_018409Re-query CCDS DB by Protein ID:NP_060879Link to BLAST:NP_060879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364369.1 347 Q9P2M1-1 347 100% 0 0
NP_001372530.1 347 Q9P2M1-1 347 100% 0 0
NP_060879.2 347 Q9P2M1-1 347 100% 0 0

Chromosomal Locations for CCDS 3840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185367180 185367245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185370640 185370814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185372856 185373079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185374135 185374240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185374319 185374461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185375613 185375726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185376909 185377018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185378081 185378186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGAAGTTGACCAGTGAAAAGTTGCCCAAGAACCCCTTTTATGCCTCTGTATCTCAGTATGCTGCTAAAA
ACCAAAAATTTTTCCAGTGGAAAAAGGAAAAGACTGATTACACCCATGCTAATTTGGTGGATAAGGCATT
GCAGCTCTTGAAGGAAAGAATACTGAAAGGAGACACTCTGGCATATTTCCTACGAGGTCAACTATATTTT
GAAGAGGGATGGTATGAAGAAGCATTAGAACAGTTTGAAGAAATCAAGGAGAAAGACCATCAAGCAACTT
ACCAGCTAGGAGTGATGTACTATGATGGGCTGGGGACCACTCTAGACGCTGAGAAAGGGGTGGACTATAT
GAAGAAAATTCTTGATTCTCCATGTCCCAAAGCAAGACACTTAAAATTTGCAGCTGCTTACAACCTCGGA
AGAGCTTATTATGAAGGAAAAGGTGTTAAACGATCAAATGAGGAAGCTGAAAGACTGTGGCTTATCGCAG
CAGACAATGGAAATCCCAAAGCTAGTGTGAAGGCTCAAAGTATGCTCGGGCTGTATTACTCAACCAAGGA
GCCCAAGGAGTTAGAAAAGGCATTTTACTGGCATTCCGAAGCATGTGGCAATGGGAATCTGGAGTCCCAG
GGTGCACTTGGGCTCATGTACTTGTATGGACAAGGCATCCGGCAGGATACGGAAGCTGCCCTGCAGTGCT
TAAGAGAAGCAGCAGAACGCGGAAACGTCTATGCTCAAGGGAATCTCGTGGAGTATTACTATAAGATGAA
ATTTTTTACAAAGTGTGTTGCATTTTCCAAAAGGATCGCTGACTATGATGAGGTTCACGACATCCCCATG
ATCGCCCAGGTCACAGACTGTCTCCCGGAGTTCATCGGCAGAGGCATGGCAATGGCATCCTTCTACCACG
CAAGGTGTCTTCAGCTTGGCTTGGGCATCACCAGGGATGAAACAACCGCTAAACACTATTATTCTAAAGC
TTGTCGTCTGAATCCCGCATTGGCAGATGAACTTCACTCCTTACTTATTCGTCAAAGAATTTAG

Translation (347 aa):
MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTLAYFLRGQLYF
EEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLG
RAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQ
GALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPM
IAQVTDCLPEFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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