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Report for CCDS42975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42975.1 Public Homo sapiens 22 XKR3 24 110 108 CCDS HistoryNCBI Gene:150165Re-query CCDS DB by CCDS ID:42975.1Re-query CCDS DB by GeneID:150165See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331428.5 ENSP00000331704.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331428.5Link to Ensembl Protein Viewer:ENSP00000331704.5Re-query CCDS DB by Nucleotide ID:ENST00000331428Re-query CCDS DB by Protein ID:ENSP00000331704
Original member Current member EBI ENST00000684488.1 ENSP00000507478.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684488.1Link to Ensembl Protein Viewer:ENSP00000507478.1Re-query CCDS DB by Nucleotide ID:ENST00000684488Re-query CCDS DB by Protein ID:ENSP00000507478
Original member Current member NCBI NM_001318251.3 NP_001305180.1 Accepted alive Link to Nucleotide Sequence:NM_001318251.3Link to Protein Sequence:NP_001305180.1Re-query CCDS DB by Nucleotide ID:NM_001318251Re-query CCDS DB by Protein ID:NP_001305180Link to BLAST:NP_001305180.1
Original member Current member NCBI NM_001386955.1 NP_001373884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386955.1Link to Protein Sequence:NP_001373884.1Re-query CCDS DB by Nucleotide ID:NM_001386955Re-query CCDS DB by Protein ID:NP_001373884Link to BLAST:NP_001373884.1
Original member Current member NCBI NM_001386956.1 NP_001373885.1 Accepted alive Link to Nucleotide Sequence:NM_001386956.1Link to Protein Sequence:NP_001373885.1Re-query CCDS DB by Nucleotide ID:NM_001386956Re-query CCDS DB by Protein ID:NP_001373885Link to BLAST:NP_001373885.1
Original member Current member NCBI NM_001386957.1 NP_001373886.1 Accepted alive Link to Nucleotide Sequence:NM_001386957.1Link to Protein Sequence:NP_001373886.1Re-query CCDS DB by Nucleotide ID:NM_001386957Re-query CCDS DB by Protein ID:NP_001373886Link to BLAST:NP_001373886.1
Original member Current member NCBI NM_175878.5 NP_787074.2 Accepted alive Link to Nucleotide Sequence:NM_175878.5Link to Protein Sequence:NP_787074.2Re-query CCDS DB by Nucleotide ID:NM_175878Re-query CCDS DB by Protein ID:NP_787074Link to BLAST:NP_787074.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305180.1 459 Q5GH77 459 100% 0 0
NP_001373884.1 459 Q5GH77 459 100% 0 0
NP_001373885.1 459 Q5GH77 459 100% 0 0
NP_001373886.1 459 Q5GH77 459 100% 0 0
NP_787074.2 459 Q5GH77 459 100% 0 0

Chromosomal Locations for CCDS 42975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 16783619 16784409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 16799771 16800024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 16807739 16808073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAGACAGTGTTTGAAGAGATGGATGAAGAAAGCACAGGAGGAGTTTCATCTTCGAAAGAAGAAATAG
TCCTTGGCCAGAGACTCCATCTAAGCTTTCCTTTTAGCATTATCTTCTCAACTGTTCTCTACTGTGGTGA
GGTTGCCTTTGGTTTATACATGTTTGAAATTTATCGAAAAGCTAATGACACATTCTGGATGTCATTTACC
ATCAGCTTTATTATTGTGGGGGCAATTTTGGATCAAATTATCCTGATGTTTTTCAACAAAGACTTGAGGA
GAAATAAGGCTGCATTACTTTTTTGGCACATTCTTCTTTTAGGACCTATTGTGAGGTGTTTGCACACCAT
TAGAAATTACCACAAATGGTTGAAAAATCTTAAACAGGAGAAGGAAGAGACTCAAGTTAGCATCACAAAG
AGAAACACGATGCTGGAAAGGGAGATTGCATTCTCAATCCGGGATAATTTCATGCAGCAGAAGGCTTTCA
AGTACATGTCAGTGATTCAGGCTTTTCTCGGTTCTGTTCCACAATTAATTTTGCAGATGTATATCAGTCT
CACTATACGAGAATGGCCTTTGAATAGAGCATTGCTGATGACATTTTCCCTGTTATCAGTTACTTATGGG
GCCATTCGCTGCAATATACTGGCCATCCAGATCAGCAATGATGATACTACCATTAAGCTACCGCCGATAG
AATTCTTCTGTGTCGTGATGTGGCGTTTTTTGGAGGTTATCTCACGTGTAGTGACTCTGGCATTTTTCAT
TGCATCTCTGAAACTGAAGAGCCTACCCGTTTTGTTAATCATATATTTTGTATCATTGTTGGCACCGTGG
CTGGAGTTTTGGAAAAGTGGAGCTCATCTTCCTGGCAACAAAGAAAATAATTCCAATATGGTGGGTACAG
TACTGATGCTTTTCTTGATCACACTGCTATATGCTGCCATCAACTTCTCCTGCTGGTCAGCAGTGAAACT
GCAGTTGTCAGATGACAAAATAATTGACGGGAGACAGAGGTGGGGCCATAGAATCCTACACTACAGCTTT
CAGTTTTTAGAAAATGTGATAATGATATTGGTATTTAGGTTCTTTGGAGGGAAAACTTTGCTGAATTGTT
GTGACTCATTAATTGCCGTGCAGCTCATCATAAGCTACCTATTGGCCACTGGCTTTATGCTCCTCTTCTA
TCAGTATTTGTACCCATGGCAGTCAGGCAAAGTGTTGCCAGGACGTACTGAAAATCAGCCAGAAGCACCG
TACTATTATGTAAACATCGAGAAAACTGAAAAGAATAAAAATAAGCAGCTGAGGAATTACTGTCACTCCT
GCAATAGGGTTGGATATTTTTCAATCAGAAAAAGTATGACATGTTCATAA

Translation (459 aa):
METVFEEMDEESTGGVSSSKEEIVLGQRLHLSFPFSIIFSTVLYCGEVAFGLYMFEIYRKANDTFWMSFT
ISFIIVGAILDQIILMFFNKDLRRNKAALLFWHILLLGPIVRCLHTIRNYHKWLKNLKQEKEETQVSITK
RNTMLEREIAFSIRDNFMQQKAFKYMSVIQAFLGSVPQLILQMYISLTIREWPLNRALLMTFSLLSVTYG
AIRCNILAIQISNDDTTIKLPPIEFFCVVMWRFLEVISRVVTLAFFIASLKLKSLPVLLIIYFVSLLAPW
LEFWKSGAHLPGNKENNSNMVGTVLMLFLITLLYAAINFSCWSAVKLQLSDDKIIDGRQRWGHRILHYSF
QFLENVIMILVFRFFGGKTLLNCCDSLIAVQLIISYLLATGFMLLFYQYLYPWQSGKVLPGRTENQPEAP
YYYVNIEKTEKNKNKQLRNYCHSCNRVGYFSIRKSMTCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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