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Report for CCDS7329.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
7329.2 |
Public |
Homo sapiens |
10 |
USP54 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:159195](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:7329.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:159195](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 7329.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000339859.8 |
ENSP00000345216.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000339859.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000345216.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000339859](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000345216](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000687698.1 |
ENSP00000510226.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000687698.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000510226.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000687698](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000510226](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001391953.1 |
NP_001378882.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001391953.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001378882.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001391953](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001378882](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001378882.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001391956.1 |
NP_001378885.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001391956.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001378885.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001391956](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001378885](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001378885.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_152586.4 |
NP_689799.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_152586.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_689799.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_152586](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_689799](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_689799.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 7329.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5055 nt): ATGTCTTGGAAGAGAAATTATTTTTCAGGGGGTCGTGGTAGTGTACAAGGGATGTTTGCACCTCGAAGCT CAACCTCCATAGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTTCCTCAACAGTGC CCTGCAGGTTTTGTGGCACTTGGATATCTTCCGACGTAGCTTTAGGCAGCTTACAACTCACAAGTGCATG GGAGATTCCTGCATCTTTTGCGCTCTCAAGGGAATCTTTAACCAGTTTCAGTGTAGTAGTGAAAAAGTGC TTCCATCTGACACTCTCCGCAGTGCTCTGGCAAAGACTTTCCAGGATGAACAACGTTTCCAGCTGGGAAT TATGGATGATGCTGCAGAGTGCTTTGAAAACCTCCTGATGAGAATTCACTTCCACATTGCTGATGAAACC AAAGAGGATATATGTACTGCCCAACACTGCATTTCCCATCAGAAATTTGCAATGACATTGTTTGAGCAGT GTGTATGTACTAGCTGTGGTGCCACTTCTGATCCGCTGCCTTTCATCCAGATGGTACATTATATCTCCAC CACTTCCCTTTGCAATCAGGCTATTTGTATGCTGGAAAGACGAGAGAAACCTTCACCAAGCATGTTTGGT GAGCTGCTGCAGAATGCCAGCACCATGGGGGATCTGCGGAACTGTCCAAGCAACTGTGGAGAGAGGATCA GGATTCGCCGTGTGTTGATGAATGCTCCACAGATTATCACGATTGGGCTGGTATGGGACTCAGACCACTC AGACTTAGCAGAAGATGTTATCCACAGCCTGGGAACCTGCCTTAAGCTGGGTGATCTGTTTTTCAGAGTG ACGGATGACCGGGCCAAGCAATCTGAACTGTACTTAGTTGGAATGATCTGTTACTATGGCAAACATTATT CTACATTCTTTTTTCAAACAAAGATTCGCAAATGGATGTATTTTGATGATGCTCATGTCAAGGAGATTGG GCCCAAATGGAAGGATGTGGTGACCAAATGCATCAAGGGGCATTATCAGCCCCTGCTGCTGCTTTATGCA GATCCCCAGGGTACCCCAGTTTCCACCCAGGACCTGCCTCCCCAAGCTGAGTTCCAGTCATACAGCAGGA CATGCTACGACAGTGAAGATTCAGGGAGGGAGCCCTCCATCTCAAGTGACACTCGAACAGATTCCTCAAC GGAGAGCTATCCCTACAAACATTCCCACCATGAGTCTGTGGTCAGTCACTTCTCTTCTGATTCTCAGGGG ACAGTCATCTATAATGTGGAAAATGATTCCATGTCTCAGAGCAGTCGGGACACAGGACACCTGACTGATA GTGAATGTAATCAGAAACACACATCCAAGAAAGGGTCACTGATAGAGCGCAAGAGGAGCTCTGGTCGGGT TAGGAGGAAAGGCGATGAGCCCCAGGCCTCGGGATACCACAGTGAAGGAGAAACACTGAAAGAGAAGCAG GCTCCTAGAAATGCCTCCAAACCATCCAGCAGCACCAACAGGCTGAGAGATTTTAAAGAGACAGTCAGCA ATATGATCCATAACAGACCATCCCTGGCTTCTCAGACCAATGTAGGCTCTCACTGCAGGGGCAGAGGAGG AGACCAGCCTGACAAAAAACCTCCTAGGACCCTGCCTTTACACTCTCGTGACTGGGAAATAGAGAGTACC AGCAGTGAGTCAAAATCCAGTTCTTCCAGCAAGTATCGTCCCACATGGAGACCCAAACGAGAATCTCTGA ATATTGACAGTATCTTTAGTAAGGACAAAAGGAAGCACTGTGGCTATACCCAGCTTAGCCCCTTTTCTGA GGATTCAGCTAAAGAATTTATACCAGATGAACCAAGCAAGCCACCTTCTTACGACATTAAATTTGGTGGA CCAAGCCCCCAGTACAAGCGCTGGGGCCCAGCACGGCCAGGCTCTCACCTTTTAGAGCAGCACCCCCGAC TAATCCAGCGAATGGAATCTGGCTATGAAAGCAGTGAGAGGAACAGCAGCAGCCCTGTCAGCCTGGATGC AGCCCTGCCTGAGAGCTCAAATGTCTACAGGGATCCAAGTGCTAAGAGATCAGCTGGGTTGGTTCCTTCC TGGCGTCATATCCCAAAGTCGCACAGCAGTAGCATCCTGGAGGTAGACTCCACAGCATCCATGGGTGGCT GGACAAAGAGTCAGCCTTTCTCTGGTGAGGAGATATCTTCTAAAAGTGAACTGGATGAATTGCAGGAAGA GGTGGCCAGGAGGGCGCAGGAACAGGAACTTCGAAGAAAACGGGAGAAGGAGTTAGAGGCAGCGAAAGGG TTTAACCCTCATCCTAGCCGCTTCATGGACTTGGATGAACTGCAGAATCAGGGGAGGAGTGACGGCTTTG AGAGGTCCCTGCAAGAGGCAGAGTCAGTGTTTGAAGAGTCACTACATCTGGAACAGAAAGGAGACTGTGC TGCAGCTTTGGCTCTCTGTAATGAAGCTATCTCTAAACTAAGACTTGCCCTGCATGGTGCCAGCTGTAGC ACGCACAGCAGAGCCCTAGTCGATAAGAAGTTGCAAATCAGTATTCGAAAAGCACGGAGCCTGCAGGATC GCATGCAGCAGCAGCAATCACCACAGCAGCCGTCGCAGCCCTCAGCCTGCCTCCCAACACAGGCGGGGAC TCTCTCTCAGCCAACAAGTGAACAGCCTATCCCGCTCCAAGTATTGTTAAGCCAAGAGGCCCAACTGGAA TCCGGCATGGATACAGAGTTTGGGGCCAGTTCTTTCTTCCATTCACCTGCTTCCTGCCATGAGTCACACT CATCACTATCTCCAGAGTCATCTGCCCCACAGCACAGCTCCCCCAGTAGATCTGCCTTGAAGCTTCTGAC TTCGGTTGAAGTAGACAACATTGAACCCTCTGCATTCCACAGGCAAGGTTTACCTAAAGCACCAGGGTGG ACTGAGAAGAATTCTCATCATAGTTGGGAGCCATTGGATGCCCCAGAGGGTAAGCTGCAAGGCTCTAGGT GTGACAACAGCAGTTGCAGCAAGCTCCCTCCACAAGAAGGAAGAGGCATTGCTCAAGAACAGCTGTTCCA AGAAAAGAAGGATCCTGCTAACCCCTCCCCGGTGATGCCTGGAATAGCCACCTCTGAGAGGGGTGATGAA CACAGCCTAGGCTGTAGTCCTTCAAATTCATCAGCTCAGCCCAGCCTTCCCCTGTATAGAACCTGCCACC CCATAATGCCTGTTGCTTCTTCATTTGTGCTTCACTGTCCTGATCCTGTGCAGAAAACTAACCAATGCCT CCAAGGCCAAAGCCTCAAAACTTCATTGACTTTAAAAGTGGACAGAGGCAGTGAGGAGACCTATAGGCCA GAGTTTCCCAGCACAAAGGGGCTTGTCCGTTCTCTGGCTGAGCAGTTCCAGAGGATGCAGGGTGTCTCCA TGAGGGATAGTACAGGTTTCAAGGATAGAAGTTTGTCAGGTAGTCTAAGGAAGAACTCTTCCCCTTCTGA TTCTAAGCCTCCTTTCTCACAGGGTCAAGAGAAAGGCCACTGGCCATGGGCAAAGCAACAATCCTCTCTG GAGGGTGGGGATAGACCACTTTCCTGGGAAGAGTCCACTGAACATTCTTCTCTTGCCTTAAACTCTGGGC TGCCTAATGGTGAAACTTCTAGCGGAGGACAGCCCAGGTTGGCAGAGCCAGACATATACCAAGAGAAGCT GTCCCAAGTGAGAGATGTTAGGTCTAAGGATCTGGGCAGCAGTACTGACTTGGGGACTTCCTTGCCTTTG GATTCCTGGGTGAATATCACAAGGTTCTGTGATTCTCAGCTTAAGCATGGGGCACCTAGGCCAGGAATGA AGTCCTCCCCTCATGATTCCCATACGTGTGTAACCTATCCAGAGAGAAATCACATCCTTTTGCATCCACA TTGGAACCAAGACACAGAGCAGGAGACCTCAGAATTGGAGTCTCTGTATCAGGCCAGTCTTCAGGCTTCT CAAGCTGGCTGTTCTGGATGGGGGCAGCAGGATACCGCCTGGCACCCACTTAGCCAAACAGGCTCTGCAG ATGGCATGGGGAGGAGGTTGCACTCAGCCCATGATCCTGGTCTCTCAAAGACTTCAACAGCAGAAATGGA GCATGGTCTCCATGAAGCCAGAACAGTGCGTACTTCTCAGGCTACACCTTGCCGAGGCCTCAGCAGGGAG TGTGGGGAGGATGAGCAGTACAGTGCAGAGAATTTACGTCGCATCTCACGCAGTCTCAGTGGCACCGTTG TCTCAGAGAGGGAGGAAGCTCCGGTTTCTTCCCACAGTTTTGATTCATCAAACGTGAGGAAGCCTTTGGA AACCGGGCACCGTTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGACCCTTCTGTGTTTCTCCTCGGT CCCCAACTCTACCTTCCCCAACCACAGTTCCTGTCCCCAGATGTCCTGATGCCCACCATGGCAGGGGAGC CCAATAGACTCCCAGGAACTTCAAGGAGTGTCCAGCAGTTTCTGGCTATGTGTGACAGGGGTGAAACTTC CCAAGGGGCCAAGTACACAGGAAGGACTTTGAACTACCAGAGCCTCCCCCATCGCTCCAGAACAGACAAC TCCTGGGCACCCTGGTCAGAGACCAACCAGCATATTGGGACCAGATTCCTGACTACTCCAGGGTGCAATC CTCAACTAACCTACACTGCCACACTACCAGAAAGAAGCAAGGGCCTTCAGGTTCCTCACACTCAGTCCTG GAGTGATCTTTTCCATTCACCCTCCCACCCTCCCATTGTTCATCCTGTGTACCCACCATCTAGCAGTCTT CATGTACCCCTGAGGTCAGCTTGGAATTCAGATCCTGTTCCAGGGTCCCGAACCCCTGGTCCTCGAAGAG TAGATATGCCCCCAGATGATGACTGGAGGCAAAGCAGTTATGCCTCCCACTCTGGACACAGGAGAACAGT GGGAGAGGGGTTTCTGTTTGTTCTATCAGATGCTCCCAGAAGAGAGCAGATCAGGGCTAGAGTCCTGCAG CACAGTCAATGGTAA
Translation (1684 aa): MSWKRNYFSGGRGSVQGMFAPRSSTSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQLTTHKCM GDSCIFCALKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADET KEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLERREKPSPSMFG ELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDLFFRV TDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYA DPQGTPVSTQDLPPQAEFQSYSRTCYDSEDSGREPSISSDTRTDSSTESYPYKHSHHESVVSHFSSDSQG TVIYNVENDSMSQSSRDTGHLTDSECNQKHTSKKGSLIERKRSSGRVRRKGDEPQASGYHSEGETLKEKQ APRNASKPSSSTNRLRDFKETVSNMIHNRPSLASQTNVGSHCRGRGGDQPDKKPPRTLPLHSRDWEIEST SSESKSSSSSKYRPTWRPKRESLNIDSIFSKDKRKHCGYTQLSPFSEDSAKEFIPDEPSKPPSYDIKFGG PSPQYKRWGPARPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAALPESSNVYRDPSAKRSAGLVPS WRHIPKSHSSSILEVDSTASMGGWTKSQPFSGEEISSKSELDELQEEVARRAQEQELRRKREKELEAAKG FNPHPSRFMDLDELQNQGRSDGFERSLQEAESVFEESLHLEQKGDCAAALALCNEAISKLRLALHGASCS THSRALVDKKLQISIRKARSLQDRMQQQQSPQQPSQPSACLPTQAGTLSQPTSEQPIPLQVLLSQEAQLE SGMDTEFGASSFFHSPASCHESHSSLSPESSAPQHSSPSRSALKLLTSVEVDNIEPSAFHRQGLPKAPGW TEKNSHHSWEPLDAPEGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDPANPSPVMPGIATSERGDE HSLGCSPSNSSAQPSLPLYRTCHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLTLKVDRGSEETYRP EFPSTKGLVRSLAEQFQRMQGVSMRDSTGFKDRSLSGSLRKNSSPSDSKPPFSQGQEKGHWPWAKQQSSL EGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLSQVRDVRSKDLGSSTDLGTSLPL DSWVNITRFCDSQLKHGAPRPGMKSSPHDSHTCVTYPERNHILLHPHWNQDTEQETSELESLYQASLQAS QAGCSGWGQQDTAWHPLSQTGSADGMGRRLHSAHDPGLSKTSTAEMEHGLHEARTVRTSQATPCRGLSRE CGEDEQYSAENLRRISRSLSGTVVSEREEAPVSSHSFDSSNVRKPLETGHRCSSSSSLPVIHDPSVFLLG PQLYLPQPQFLSPDVLMPTMAGEPNRLPGTSRSVQQFLAMCDRGETSQGAKYTGRTLNYQSLPHRSRTDN SWAPWSETNQHIGTRFLTTPGCNPQLTYTATLPERSKGLQVPHTQSWSDLFHSPSHPPIVHPVYPPSSSL HVPLRSAWNSDPVPGSRTPGPRRVDMPPDDDWRQSSYASHSGHRRTVGEGFLFVLSDAPRREQIRARVLQ HSQW
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