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Report for CCDS13249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13249.1 Public Homo sapiens 20 EIF6 24 110 108 CCDS HistoryNCBI Gene:3692Re-query CCDS DB by CCDS ID:13249.1Re-query CCDS DB by GeneID:3692See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374436.7 ENSP00000363559.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374436.7Link to Ensembl Protein Viewer:ENSP00000363559.3Re-query CCDS DB by Nucleotide ID:ENST00000374436Re-query CCDS DB by Protein ID:ENSP00000363559
Original member Current member EBI ENST00000374450.8 ENSP00000363574.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374450.8Link to Ensembl Protein Viewer:ENSP00000363574.3Re-query CCDS DB by Nucleotide ID:ENST00000374450Re-query CCDS DB by Protein ID:ENSP00000363574
Original member Current member EBI ENST00000675032.1 ENSP00000502429.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675032.1Link to Ensembl Protein Viewer:ENSP00000502429.1Re-query CCDS DB by Nucleotide ID:ENST00000675032Re-query CCDS DB by Protein ID:ENSP00000502429
Original member Current member NCBI NM_001267810.1 NP_001254739.1 Accepted alive Link to Nucleotide Sequence:NM_001267810.1Link to Protein Sequence:NP_001254739.1Re-query CCDS DB by Nucleotide ID:NM_001267810Re-query CCDS DB by Protein ID:NP_001254739Link to BLAST:NP_001254739.1
Original member Current member NCBI NM_002212.4 NP_002203.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002212.4Link to Protein Sequence:NP_002203.1Re-query CCDS DB by Nucleotide ID:NM_002212Re-query CCDS DB by Protein ID:NP_002203Link to BLAST:NP_002203.1
Original member Current member NCBI NM_181468.2 NP_852133.1 Accepted alive Link to Nucleotide Sequence:NM_181468.2Link to Protein Sequence:NP_852133.1Re-query CCDS DB by Nucleotide ID:NM_181468Re-query CCDS DB by Protein ID:NP_852133Link to BLAST:NP_852133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254739.1 245 P56537-1 245 100% 0 0
NP_002203.1 245 P56537-1 245 100% 0 0
NP_852133.1 245 P56537-1 245 100% 0 0

Chromosomal Locations for CCDS 13249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35279197 35279206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35279566 35279747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35279942 35280118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35280654 35280829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35284176 35284261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35284381 35284487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGGTCCGAGCTTCGTTCGAGAACAACTGTGAGATCGGCTGCTTTGCCAAGCTCACCAACACCTACT
GTCTGGTAGCGATCGGAGGCTCAGAGAACTTCTACAGTGTGTTCGAGGGCGAGCTCTCCGATACCATCCC
CGTGGTGCACGCGTCTATCGCCGGCTGCCGCATCATCGGGCGCATGTGTGTGGGGAACAGGCACGGTCTC
CTGGTACCCAACAATACCACCGACCAGGAGCTGCAACACATTCGCAACAGCCTCCCAGACACAGTGCAGA
TTAGGCGGGTGGAGGAGCGGCTCTCAGCCTTGGGCAATGTCACCACCTGCAATGACTACGTGGCCTTGGT
CCACCCAGACTTGGACAGGGAGACAGAAGAAATTCTGGCAGATGTGCTCAAGGTGGAAGTCTTCAGACAG
ACAGTGGCCGACCAGGTGCTAGTAGGAAGCTACTGTGTCTTCAGCAATCAGGGAGGGCTGGTGCATCCCA
AGACTTCAATTGAAGACCAGGATGAGCTGTCCTCTCTTCTTCAAGTCCCCCTTGTGGCGGGGACTGTGAA
CCGAGGCAGTGAGGTGATTGCTGCTGGGATGGTGGTGAATGACTGGTGTGCCTTCTGTGGCCTGGACACA
ACCAGCACAGAGCTGTCAGTGGTGGAGAGTGTCTTCAAGCTGAATGAAGCCCAGCCTAGCACCATTGCCA
CCAGCATGCGGGATTCCCTCATTGACAGCCTCACCTGA

Translation (245 aa):
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGL
LVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQ
TVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDT
TSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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