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Report for CCDS577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
577.1 Public Homo sapiens 1 MAGOH 24 110 108 CCDS HistoryNCBI Gene:4116Re-query CCDS DB by CCDS ID:577.1Re-query CCDS DB by GeneID:4116See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371470.8 ENSP00000360525.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371470.8Link to Ensembl Protein Viewer:ENSP00000360525.3Re-query CCDS DB by Nucleotide ID:ENST00000371470Re-query CCDS DB by Protein ID:ENSP00000360525
Original member Current member NCBI NM_002370.4 NP_002361.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002370.4Link to Protein Sequence:NP_002361.1Re-query CCDS DB by Nucleotide ID:NM_002370Re-query CCDS DB by Protein ID:NP_002361Link to BLAST:NP_002361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002361.1 146 P61326-1 146 100% 0 0

Chromosomal Locations for CCDS 577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53227045 53227144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53228872 53228954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53233542 53233652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53235577 53235635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53238361 53238448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGAGAGTGACTTTTATCTGCGTTACTACGTGGGGCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGT
TTGAGTTTCGACCGGACGGGAAGTTAAGATATGCCAACAACAGCAATTACAAGAATGATGTCATGATCAG
AAAAGAGGCTTATGTACATAAAAGCGTGATGGAGGAACTGAAGAGAATAATTGACGACAGTGAAATTACC
AAAGAGGATGATGCATTGTGGCCTCCTCCTGACCGAGTGGGCCGGCAGGAGCTTGAAATCGTCATTGGAG
ATGAACACATTTCTTTTACAACATCAAAAATTGGTTCCCTTATTGATGTCAATCAATCCAAGGATCCAGA
AGGCTTACGAGTATTTTATTATCTTGTCCAGGACCTGAAGTGTTTGGTCTTCAGTCTTATTGGATTACAC
TTCAAGATTAAACCAATCTAG

Translation (146 aa):
MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEIT
KEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLH
FKIKPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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