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Report for CCDS1672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1672.1 Public Homo sapiens 2 ODC1 24 110 108 CCDS HistoryNCBI Gene:4953Re-query CCDS DB by CCDS ID:1672.1Re-query CCDS DB by GeneID:4953See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000234111.9 ENSP00000234111.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000234111.9Link to Ensembl Protein Viewer:ENSP00000234111.4Re-query CCDS DB by Nucleotide ID:ENST00000234111Re-query CCDS DB by Protein ID:ENSP00000234111
Original member Current member EBI ENST00000405333.5 ENSP00000385333.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405333.5Link to Ensembl Protein Viewer:ENSP00000385333.1Re-query CCDS DB by Nucleotide ID:ENST00000405333Re-query CCDS DB by Protein ID:ENSP00000385333
Original member Current member EBI ENST00000443218.2 ENSP00000390691.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443218.2Link to Ensembl Protein Viewer:ENSP00000390691.2Re-query CCDS DB by Nucleotide ID:ENST00000443218Re-query CCDS DB by Protein ID:ENSP00000390691
Original member Current member EBI ENST00000699835.1 ENSP00000514633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699835.1Link to Ensembl Protein Viewer:ENSP00000514633.1Re-query CCDS DB by Nucleotide ID:ENST00000699835Re-query CCDS DB by Protein ID:ENSP00000514633
Original member Current member EBI ENST00000699836.1 ENSP00000514634.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699836.1Link to Ensembl Protein Viewer:ENSP00000514634.1Re-query CCDS DB by Nucleotide ID:ENST00000699836Re-query CCDS DB by Protein ID:ENSP00000514634
Original member Current member NCBI NM_001287189.2 NP_001274118.1 Accepted alive Link to Nucleotide Sequence:NM_001287189.2Link to Protein Sequence:NP_001274118.1Re-query CCDS DB by Nucleotide ID:NM_001287189Re-query CCDS DB by Protein ID:NP_001274118Link to BLAST:NP_001274118.1
Original member Current member NCBI NM_001287190.2 NP_001274119.1 Accepted alive Link to Nucleotide Sequence:NM_001287190.2Link to Protein Sequence:NP_001274119.1Re-query CCDS DB by Nucleotide ID:NM_001287190Re-query CCDS DB by Protein ID:NP_001274119Link to BLAST:NP_001274119.1
Original member Current member NCBI NM_002539.3 NP_002530.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002539.3Link to Protein Sequence:NP_002530.1Re-query CCDS DB by Nucleotide ID:NM_002539Re-query CCDS DB by Protein ID:NP_002530Link to BLAST:NP_002530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274118.1 461 P11926 461 100% 0 0
NP_001274119.1 461 P11926 461 100% 0 0
NP_002530.1 461 P11926 461 100% 0 0

Chromosomal Locations for CCDS 1672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10440724 10440868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10441509 10441723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10441817 10441929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10442012 10442174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10443230 10443313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10443490 10443571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10443702 10443836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10444095 10444267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10444474 10444647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10444931 10445032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAACAACTTTGGTAATGAAGAGTTTGACTGCCACTTCCTCGATGAAGGTTTTACTGCCAAGGACATTC
TGGACCAGAAAATTAATGAAGTTTCTTCTTCTGATGATAAGGATGCCTTCTATGTGGCAGACCTGGGAGA
CATTCTAAAGAAACATCTGAGGTGGTTAAAAGCTCTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGT
AATGATAGCAAAGCCATCGTGAAGACCCTTGCTGCTACCGGGACAGGATTTGACTGTGCTAGCAAGACTG
AAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGT
ATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTTGAGTTGATG
AAAGTTGCCAGAGCACATCCCAAAGCAAAGTTGGTTTTGCGGATTGCCACTGATGATTCCAAAGCAGTCT
GTCGTCTCAGTGTGAAATTCGGTGCCACGCTCAGAACCAGCAGGCTCCTTTTGGAACGGGCGAAAGAGCT
AAATATCGATGTTGTTGGTGTCAGCTTCCATGTAGGAAGCGGCTGTACCGATCCTGAGACCTTCGTGCAG
GCAATCTCTGATGCCCGCTGTGTTTTTGACATGGGGGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATA
TTGGCGGTGGCTTTCCTGGATCTGAGGATGTGAAACTTAAATTTGAAGAGATCACCGGCGTAATCAACCC
AGCGTTGGACAAATACTTTCCGTCAGACTCTGGAGTGAGAATCATAGCTGAGCCCGGCAGATACTATGTT
GCATCAGCTTTCACGCTTGCAGTTAATATCATTGCCAAGAAAATTGTATTAAAGGAACAGACGGGCTCTG
ATGACGAAGATGAGTCGAGTGAGCAGACCTTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAA
TTGCATACTCTATGACCACGCACATGTAAAGCCCCTTCTGCAAAAGAGACCTAAACCAGATGAGAAGTAT
TATTCATCCAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTGCCTG
AAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACACTGTTGCTGCTGCCTCTACGTT
CAATGGCTTCCAGAGGCCGACGATCTACTATGTGATGTCAGGGCCTGCGTGGCAACTCATGCAGCAATTC
CAGAACCCCGACTTCCCACCCGAAGTAGAGGAACAGGATGCCAGCACCCTGCCTGTGTCTTGTGCCTGGG
AGAGTGGGATGAAACGCCACAGAGCAGCCTGTGCTTCGGCTAGTATTAATGTGTAG

Translation (461 aa):
MNNFGNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKC
NDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELM
KVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQ
AISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYV
ASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKY
YSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQF
QNPDFPPEVEEQDASTLPVSCAWESGMKRHRAACASASINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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