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Report for CCDS32773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32773.1 Public Homo sapiens 17 RFNG 24 110 108 CCDS HistoryNCBI Gene:5986Re-query CCDS DB by CCDS ID:32773.1Re-query CCDS DB by GeneID:5986See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32773.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310496.9 ENSP00000307971.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310496.9Link to Ensembl Protein Viewer:ENSP00000307971.4Re-query CCDS DB by Nucleotide ID:ENST00000310496Re-query CCDS DB by Protein ID:ENSP00000307971
Original member Current member NCBI NM_002917.2 NP_002908.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002917.2Link to Protein Sequence:NP_002908.1Re-query CCDS DB by Nucleotide ID:NM_002917Re-query CCDS DB by Protein ID:NP_002908Link to BLAST:NP_002908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002908.1 331 Q9Y644 331 100% 0 0

Chromosomal Locations for CCDS 32773.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82048726 82048807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82049031 82049116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82049677 82049842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82049918 82050006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82050402 82050555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82050662 82050764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82051294 82051342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82051500 82051766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAGCCGCGCGCGTGGGGCGCTGTGCCGGGCCTGCCTCGCGCTGGCCGCGGCCCTGGCCGCGCTGCTGT
TACTGCCGCTGCCGCTGCCCCGCGCGCCCGCCCCGGCCCGGACCCCCGCCCCGGCCCCGCGCGCGCCCCC
GTCCCGGCCCGCTGCCCCCAGCCTGCGGCCTGACGACGTCTTCATCGCCGTCAAGACCACCCGGAAGAAC
CACGGGCCGCGCCTGCGGCTGCTGCTGCGCACCTGGATCTCCCGGGCCCGCCAGCAGACGTTTATCTTCA
CCGACGGGGACGACCCTGAGCTCGAGCTCCAGGGCGGCGACCGTGTCATCAACACCAACTGCTCGGCGGT
GCGCACTCGTCAGGCCCTCTGCTGCAAGATGTCCGTGGAGTATGACAAGTTCATTGAGTCCGGGCGCAAG
TGGTTTTGCCACGTGGATGATGACAATTATGTGAACGCCAGGAGCCTCCTGCACCTGCTCTCCAGCTTCT
CACCCAGCCAGGACGTCTACCTGGGGCGGCCCAGCCTGGACCACCCCATTGAGGCCACCGAGAGGGTCCA
GGGTGGCAGAACTGTGACCACGGTCAAGTTCTGGTTTGCTACTGGTGGGGCCGGGTTCTGCCTCAGCAGA
GGCCTTGCCCTCAAGATGAGCCCATGGGCCAGCCTGGGCAGCTTCATGAGCACAGCTGAGCAGGTGCGGC
TGCCGGATGACTGCACAGTTGGCTACATCGTGGAGGGGCTCCTGGGCGCCCGCCTGCTGCACAGCCCCCT
CTTCCACTCTCACCTGGAGAACCTGCAGAGGCTGCCGCCCGACACCCTGCTCCAGCAGGTTACCTTGAGC
CATGGGGGTCCTGAGAACCCACATAACGTGGTGAACGTGGCTGGAGGCTTCAGCCTGCATCAAGACCCCA
CACGGTTTAAGTCTATCCATTGTCTTCTGTACCCAGACACGGACTGGTGTCCCAGGCAGAAACAGGGCGC
CCCGACCTCTCGGTGA

Translation (331 aa):
MSRARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIAVKTTRKN
HGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQALCCKMSVEYDKFIESGRK
WFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLSR
GLALKMSPWASLGSFMSTAEQVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLS
HGGPENPHNVVNVAGGFSLHQDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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