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Report for CCDS3751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3751.1 Public Homo sapiens 4 CLGN 24 110 108 CCDS HistoryNCBI Gene:1047Re-query CCDS DB by CCDS ID:3751.1Re-query CCDS DB by GeneID:1047See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3751.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325617.10 ENSP00000326699.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325617.10Link to Ensembl Protein Viewer:ENSP00000326699.5Re-query CCDS DB by Nucleotide ID:ENST00000325617Re-query CCDS DB by Protein ID:ENSP00000326699
Original member Current member EBI ENST00000414773.5 ENSP00000392782.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414773.5Link to Ensembl Protein Viewer:ENSP00000392782.1Re-query CCDS DB by Nucleotide ID:ENST00000414773Re-query CCDS DB by Protein ID:ENSP00000392782
Original member Current member NCBI NM_001130675.2 NP_001124147.1 Accepted alive Link to Nucleotide Sequence:NM_001130675.2Link to Protein Sequence:NP_001124147.1Re-query CCDS DB by Nucleotide ID:NM_001130675Re-query CCDS DB by Protein ID:NP_001124147Link to BLAST:NP_001124147.1
Original member Current member NCBI NM_004362.3 NP_004353.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004362.3Link to Protein Sequence:NP_004353.1Re-query CCDS DB by Nucleotide ID:NM_004362Re-query CCDS DB by Protein ID:NP_004353Link to BLAST:NP_004353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124147.1 610 O14967-1 610 100% 0 0
NP_004353.1 610 O14967-1 610 100% 0 0

Chromosomal Locations for CCDS 3751.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140389224 140389304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140390628 140390728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140392219 140392378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140392586 140392711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140393826 140394041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140395819 140395969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140396092 140396205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140398851 140399040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140400357 140400549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140401985 140402066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140405942 140406083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140409837 140409895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140410553 140410626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140412935 140413078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGCATTTCCAAGCCTTTTGGCTATGTTTGGGTCTTCTGTTCATCTCAATTAATGCAGAATTTATGGATG
ATGATGTTGAGACGGAAGACTTTGAAGAAAATTCAGAAGAAATTGATGTTAATGAAAGTGAACTTTCCTC
AGAGATTAAATATAAGACACCTCAACCTATAGGAGAAGTATATTTTGCAGAAACTTTTGATAGTGGAAGG
TTGGCTGGATGGGTCTTATCAAAAGCAAAGAAAGATGACATGGATGAGGAAATTTCAATATACGATGGAA
GATGGGAAATTGAAGAGTTGAAAGAAAACCAGGTACCTGGTGACAGAGGACTGGTATTAAAATCTAGAGC
AAAGCATCATGCAATATCTGCTGTATTAGCAAAACCATTCATTTTTGCTGATAAACCCTTGATAGTTCAA
TATGAAGTAAATTTTCAAGATGGTATTGATTGTGGAGGTGCATACATTAAACTCCTAGCAGACACTGATG
ATTTGATTCTGGAAAACTTTTATGATAAAACATCCTATATCATTATGTTTGGACCAGATAAATGTGGAGA
AGATTATAAACTTCATTTTATCTTCAGACATAAACATCCCAAAACTGGAGTTTTCGAAGAGAAACATGCC
AAACCTCCAGATGTAGACCTTAAAAAGTTCTTTACAGACAGGAAGACTCATCTTTATACCCTTGTGATGA
ATCCAGATGACACATTTGAGGTGTTAGTTGATCAAACAGTTGTAAACAAAGGAAGCCTCCTAGAGGATGT
GGTTCCTCCTATCAAACCTCCCAAAGAAATTGAAGATCCCAATGATAAAAAACCTGAGGAATGGGATGAA
AGAGCAAAAATTCCTGATCCTTCTGCCGTCAAACCAGAAGACTGGGATGAAAGTGAACCTGCCCAAATAG
AAGATTCAAGTGTTGTTAAACCTGCTGGCTGGCTTGATGATGAACCAAAATTTATCCCTGATCCTAATGC
TGAAAAACCTGATGACTGGAATGAAGACACGGATGGAGAATGGGAGGCACCTCAGATTCTTAATCCAGCA
TGTCGGATTGGGTGTGGTGAGTGGAAACCTCCCATGATAGATAACCCAAAATACAAAGGAGTATGGAGAC
CTCCACTGGTCGATAATCCTAACTATCAGGGAATCTGGAGTCCTCGAAAAATTCCTAATCCAGATTATTT
CGAAGATGATCATCCATTTCTTCTGACTTCTTTCAGTGCTCTTGGTTTAGAGCTTTGGTCTATGACCTCT
GATATCTACTTTGATAATTTTATTATCTGTTCGGAAAAGGAAGTAGCAGATCACTGGGCTGCAGATGGTT
GGAGATGGAAAATAATGATAGCAAATGCTAATAAGCCTGGTGTATTAAAACAGTTAATGGCAGCTGCTGA
AGGGCACCCATGGCTTTGGTTGATTTATCTTGTGACAGCAGGAGTGCCAATAGCATTAATTACTTCATTT
TGTTGGCCAAGAAAAGTAAAGAAAAAACATAAAGATACAGAGTATAAAAAAACCGACATATGTATACCAC
AAACAAAAGGAGTACTAGAGCAAGAAGAAAAGGAAGAGAAAGCAGCCCTGGAAAAACCAATGGACCTGGA
AGAGGAAAAAAAGCAAAATGATGGTGAAATGCTTGAAAAAGAAGAGGAAAGTGAACCTGAGGAAAAGAGT
GAAGAAGAAATTGAAATCATAGAAGGGCAAGAAGAAAGTAATCAATCAAATAAGTCTGGGTCAGAGGATG
AGATGAAAGAAGCAGATGAGAGCACAGGATCTGGAGATGGGCCGATAAAGTCAGTACGCAAAAGAAGAGT
ACGAAAGGACTAA

Translation (610 aa):
MHFQAFWLCLGLLFISINAEFMDDDVETEDFEENSEEIDVNESELSSEIKYKTPQPIGEVYFAETFDSGR
LAGWVLSKAKKDDMDEEISIYDGRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQ
YEVNFQDGIDCGGAYIKLLADTDDLILENFYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHA
KPPDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLLEDVVPPIKPPKEIEDPNDKKPEEWDE
RAKIPDPSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQILNPA
CRIGCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLTSFSALGLELWSMTS
DIYFDNFIICSEKEVADHWAADGWRWKIMIANANKPGVLKQLMAAAEGHPWLWLIYLVTAGVPIALITSF
CWPRKVKKKHKDTEYKKTDICIPQTKGVLEQEEKEEKAALEKPMDLEEEKKQNDGEMLEKEEESEPEEKS
EEEIEIIEGQEESNQSNKSGSEDEMKEADESTGSGDGPIKSVRKRRVRKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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