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Report for CCDS14185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14185.1 Public Homo sapiens X SCML2 24 110 108 CCDS HistoryNCBI Gene:10389Re-query CCDS DB by CCDS ID:14185.1Re-query CCDS DB by GeneID:10389See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251900.9 ENSP00000251900.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251900.9Link to Ensembl Protein Viewer:ENSP00000251900.4Re-query CCDS DB by Nucleotide ID:ENST00000251900Re-query CCDS DB by Protein ID:ENSP00000251900
Original member Current member NCBI NM_006089.3 NP_006080.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006089.3Link to Protein Sequence:NP_006080.1Re-query CCDS DB by Nucleotide ID:NM_006089Re-query CCDS DB by Protein ID:NP_006080Link to BLAST:NP_006080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006080.1 700 Q9UQR0-1 700 100% 0 0

Chromosomal Locations for CCDS 14185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 18241251 18241379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18242439 18242590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18246577 18246828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18247769 18247882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18256848 18257030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18258044 18258247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18260171 18260291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18265585 18265802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18304972 18305215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18320332 18320420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18323859 18324093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18324907 18324977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18330587 18330655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18334050 18334071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGGACAAACAGTGAATGAAGATTCCATGGATGTCAAGAAGGAGAATCAAGAGAAAACTCCTCAGTCAA
GTACATCTTCTGTACAAAGGGATGATTTCCACTGGGAGGAGTATTTGAAAGAGACTGGGTCTATAAGTGC
TCCTTCAGAGTGCTTCCGTCAGTCTCAGATTCCACCTGTGAATGATTTCAAAGTTGGTATGAAATTGGAA
GCCCGTGACCCTCGCAATGCCACTTCAGTATGTATTGCTACGGTTATTGGAATTACTGGGGCCAGGTTAC
GGTTACGACTGGATGGTAGTGACAACAGAAATGATTTTTGGAGGCTTGTCGATTCCCCAGACATACAACC
TGTTGGGACATGTGAAAAGGAAGGAGACTTACTTCAACCTCCACTAGGGTACCAGATGAATACATCCTCC
TGGCCGATGTTCCTCTTAAAGACACTAAATGGGTCTGAAATGGCATCTGCCACATTATTTAAGAAGGAAC
CACCAAAGCCCCCACTAAATAATTTTAAAGTGGGGATGAAACTGGAAGCTATTGACAAAAAGAACCCGTA
TCTCATCTGTCCTGCGACCATTGGAGATGTTAAAGGGGATGAAGTTCATATCACATTTGATGGCTGGAGT
GGAGCTTTTGATTACTGGTGCAAGTATGATTCTCGAGATATTTTCCCAGCTGGGTGGTGTCGCCTGACAG
GAGATGTATTACAACCCCCAGGAACTAGTGTTCCTATTGTAAAGAATATAGCAAAAACAGAGTCTTCTCC
TTCCGAAGCAAGCCAGCATTCAATGCAGTCTCCACAGAAAACTACTCTAATATTACCAACACAGCAGGTC
AGGAGATCAAGTCGAATTAAACCACCTGGACCTACTGCAGTCCCCAAAAGGAGCAGTTCTGTTAAAAATA
TCACACCAAGGAAAAAAGGTCCAAACTCAGGAAAAAAGGAAAAACCTTTGCCCGTGATATGTTCTACATC
TGCAGCTTCTCTAAAATCGCTGACCAGAGACCGTGGCATGTTATATAAAGATGTCGCTTCTGGGCCATGT
AAAATAGTGATGTCTACAGTCTGTGTCTATGTAAACAAACATGGAAACTTTGGCCCTCATCTGGATCCCA
AGAGAATCCAGCAGCTGCCTGACCACTTCGGCCCGGGCCCGGTGAATGTGGTGCTTCGCCGGATTGTGCA
GGCCTGTGTGGATTGTGCCCTTGAAACTAAAACTGTTTTTGGATACCTGAAGCCAGATAATCGTGGAGGA
GAAGTGATAACTGCCTCCTTTGATGGGGAAACTCATTCCATCCAGCTCCCTCCAGTGAACAGTGCATCAT
TTGCTCTTCGCTTTCTTGAGAACTTCTGCCACAGTCTGCAGTGTGATAACCTTTTGAGTAGCCAGCCTTT
TAGTTCTTCCAGGGGTCATACTCACAGCTCTGCAGAGCATGATAAAAATCAGTCAGCAAAAGAAGATGTA
ACAGAAAGGCAAAGCACCAAACGATCTCCTCAGCAAACTGTACCATATGTTGTTCCTCTCTCTCCTAAGC
TCCCCAAAACAAAGGAGTATGCGTCTGAAGGAGAACCATTGTTTGCTGGGGGAAGTGCCATTCCCAAAGA
GGAGAATCTTTCAGAAGATTCTAAGAGCTCATCACTAAATTCAGGAAATTATTTGAATCCTGCCTGTAGA
AATCCTATGTATATTCATACTTCAGTCTCCCAGGATTTTTCTCGAAGTGTGCCAGGCACCACAAGTTCAC
CACTAGTTGGGGACATATCCCCCAAGAGCAGTCCCCATGAAGTTAAATTCCAAATGCAGAGGAAAAGTGA
AGCTCCAAGTTATATAGCTGTACCTGATCCCAGTGTCCTGAAACAAGGCTTCTCTAAGGACCCTTCAACC
TGGTCTGTGGATGAAGTGATACAGTTTATGAAACATACAGATCCTCAGATATCAGGCCCCCTCGCCGACC
TCTTCAGGCAACATGAAATTGATGGGAAGGCTCTGTTCCTACTCAAGAGTGATGTGATGATGAAGTATAT
GGGGCTGAAGCTGGGGCCAGCATTAAAGCTGTGTTACTACATTGAAAAGCTTAAAGAAGGAAAATACAGT
TAA

Translation (700 aa):
MGQTVNEDSMDVKKENQEKTPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLE
ARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSS
WPMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWS
GAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGTSVPIVKNIAKTESSPSEASQHSMQSPQKTTLILPTQQV
RRSSRIKPPGPTAVPKRSSSVKNITPRKKGPNSGKKEKPLPVICSTSAASLKSLTRDRGMLYKDVASGPC
KIVMSTVCVYVNKHGNFGPHLDPKRIQQLPDHFGPGPVNVVLRRIVQACVDCALETKTVFGYLKPDNRGG
EVITASFDGETHSIQLPPVNSASFALRFLENFCHSLQCDNLLSSQPFSSSRGHTHSSAEHDKNQSAKEDV
TERQSTKRSPQQTVPYVVPLSPKLPKTKEYASEGEPLFAGGSAIPKEENLSEDSKSSSLNSGNYLNPACR
NPMYIHTSVSQDFSRSVPGTTSSPLVGDISPKSSPHEVKFQMQRKSEAPSYIAVPDPSVLKQGFSKDPST
WSVDEVIQFMKHTDPQISGPLADLFRQHEIDGKALFLLKSDVMMKYMGLKLGPALKLCYYIEKLKEGKYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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