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Report for CCDS4417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4417.1 Public Homo sapiens 5 LMAN2 24 110 108 CCDS HistoryNCBI Gene:10960Re-query CCDS DB by CCDS ID:4417.1Re-query CCDS DB by GeneID:10960See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303127.12 ENSP00000303366.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303127.12Link to Ensembl Protein Viewer:ENSP00000303366.7Re-query CCDS DB by Nucleotide ID:ENST00000303127Re-query CCDS DB by Protein ID:ENSP00000303366
Original member Current member NCBI NM_006816.3 NP_006807.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006816.3Link to Protein Sequence:NP_006807.1Re-query CCDS DB by Nucleotide ID:NM_006816Re-query CCDS DB by Protein ID:NP_006807Link to BLAST:NP_006807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006807.1 356 Q12907 356 100% 0 0

Chromosomal Locations for CCDS 4417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177332086 177332246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177334284 177334403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177337136 177337250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177337363 177337524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177337706 177337785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177338488 177338605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177351173 177351291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177351452 177351647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGCGGCGGAAGGCTGGATTTGGCGTTGGGGCTGGGGCCGGCGGTGCCTGGGAAGGCCTGGGCTTCTCG
GCCCCGGCCCTGGCCCCACTACACCTCTCTTTCTTCTTTTGTTGTTGGGGTCTGTGACTGCGGATATAAC
TGACGGCAACAGTGAACATCTCAAGCGGGAGCATTCGCTCATTAAGCCCTACCAAGGGGTCGGTTCCAGC
TCTATGCCCCTCTGGGACTTCCAGGGCAGCACTATGCTCACGAGCCAGTACGTACGTCTGACCCCTGACG
AGCGCAGCAAAGAGGGCTCTATCTGGAACCACCAGCCGTGCTTCCTCAAAGACTGGGAAATGCACGTCCA
CTTCAAAGTCCACGGCACAGGGAAGAAGAACCTCCATGGAGACGGCATCGCCTTGTGGTACACCCGGGAC
CGCCTCGTGCCAGGGCCTGTGTTTGGAAGCAAAGATAACTTCCACGGCTTAGCCATCTTCCTGGACACCT
ACCCCAATGATGAGACCACTGAGCGCGTGTTCCCGTACATCTCGGTGATGGTGAACAATGGCTCCCTGTC
CTACGACCACAGCAAGGATGGGCGCTGGACCGAGCTGGCGGGCTGCACGGCTGACTTCCGCAACCGCGAT
CACGACACCTTCCTGGCTGTGCGCTACTCCCGGGGCCGTCTGACGGTGATGACCGACCTGGAGGACAAGA
ACGAGTGGAAGAACTGCATTGACATCACGGGAGTGCGCCTGCCCACCGGCTACTACTTCGGGGCCTCCGC
CGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCAC
ACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAG
ACAACGTGGACGACCCCACGGGGAACTTCCGCAGCGGGCCCCTGACGGGGTGGCGGGTGTTCCTGCTGCT
GCTGTGCGCTCTCCTGGGCATCGTTGTCTGCGCCGTGGTGGGGGCCGTGGTGTTCCAGAAGCGGCAGGAG
CGGAACAAGCGCTTCTACTGA

Translation (356 aa):
MAAEGWIWRWGWGRRCLGRPGLLGPGPGPTTPLFLLLLLGSVTADITDGNSEHLKREHSLIKPYQGVGSS
SMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRD
RLVPGPVFGSKDNFHGLAIFLDTYPNDETTERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRD
HDTFLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVEH
TPDEESIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLLLCALLGIVVCAVVGAVVFQKRQE
RNKRFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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