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Report for CCDS43446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43446.1 Public Homo sapiens 6 TCF19 24 110 108 CCDS HistoryNCBI Gene:6941Re-query CCDS DB by CCDS ID:43446.1Re-query CCDS DB by GeneID:6941See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376255.4 ENSP00000365431.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376255.4Link to Ensembl Protein Viewer:ENSP00000365431.4Re-query CCDS DB by Nucleotide ID:ENST00000376255Re-query CCDS DB by Protein ID:ENSP00000365431
Original member Current member EBI ENST00000376257.8 ENSP00000365433.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376257.8Link to Ensembl Protein Viewer:ENSP00000365433.3Re-query CCDS DB by Nucleotide ID:ENST00000376257Re-query CCDS DB by Protein ID:ENSP00000365433
Original member Current member NCBI NM_001077511.2 NP_001070979.1 Accepted alive Link to Nucleotide Sequence:NM_001077511.2Link to Protein Sequence:NP_001070979.1Re-query CCDS DB by Nucleotide ID:NM_001077511Re-query CCDS DB by Protein ID:NP_001070979Link to BLAST:NP_001070979.1
Original member Current member NCBI NM_001318908.2 NP_001305837.1 Accepted alive Link to Nucleotide Sequence:NM_001318908.2Link to Protein Sequence:NP_001305837.1Re-query CCDS DB by Nucleotide ID:NM_001318908Re-query CCDS DB by Protein ID:NP_001305837Link to BLAST:NP_001305837.1
Original member Current member NCBI NM_007109.3 NP_009040.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007109.3Link to Protein Sequence:NP_009040.2Re-query CCDS DB by Nucleotide ID:NM_007109Re-query CCDS DB by Protein ID:NP_009040Link to BLAST:NP_009040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070979.1 345 Q9Y242 345 100% 0 0
NP_001305837.1 345 Q9Y242 345 100% 0 0
NP_009040.2 345 Q9Y242 345 100% 0 0

Chromosomal Locations for CCDS 43446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31159470 31159707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31161447 31162005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31162477 31162717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCTGCCCTGCTTCCAACTGCTGCGCATAGGGGGCGGCAGGGGCGGTGATCTCTACACCTTCCACCCCC
CCGCCGGGGCTGGCTGCACCTATCGCTTGGGCCACAGGGCCGACCTGTGTGATGTGGCCCTGCGGCCCCA
GCAGGAGCCTGGCCTCATCTCTGGGATCCACGCCGAACTGCATGCCGAGCCCCGGGGTGATGACTGGAGG
GTCAGCCTGGAAGACCACAGCAGCCAAGGTACTTTGGTCAATAATGTCCGACTCCCAAGAGGTCACAGGC
TGGAATTGAGTGATGGAGACCTCCTGACCTTTGGCCCTGAAGGGCCCCCAGGAACCAGCCCCTCGGAGTT
CTACTTCATGTTCCAACAAGTACGAGTCAAGCCTCAGGACTTTGCTGCCATTACCATCCCACGGTCTAGG
GGAGAAGCCCGGGTTGGGGCTGGTTTCCGGCCTATGCTGCCCTCCCAGGGGGCTCCACAGCGGCCTCTCA
GCACCTTCTCCCCTGCCCCCAAGGCCACACTGATCCTAAACTCCATAGGCAGCCTCAGCAAGCTCCGGCC
CCAGCCCCTCACCTTCTCCCCTAGTTGGGGTGGACCAAAGAGCCTGCCTGTTCCCGCCCCACCTGGGGAA
ATGGGGACCACGCCTTCTGCTCCACCACAACGCAATCGGAGGAAATCTGTTCACCGAGTGTTGGCGGAAC
TGGATGATGAGAGTGAGCCTCCTGAGAACCCGCCACCGGTCCTTATGGAGCCCAGGAAGAAACTCCGTGT
AGACAAAGCCCCACTGACTCCCACTGGAAATCGACGTGGCCGTCCTCGGAAGTACCCAGTGAGCGCTCCC
ATGGCTCCCCCTGCAGTTGGGGGCGGGGAGCCCTGTGCAGCTCCTTGTTGCTGCCTGCCCCAGGAAGAGA
CAGTGGCCTGGGTTCAGTGTGATGGCTGTGACGTCTGGTTCCATGTGGCCTGTGTTGGCTGCAGCATCCA
GGCTGCCAGGGAGGCCGACTTCCGATGCCCAGGGTGCCGGGCTGGCATTCAGACCTAA

Translation (345 aa):
MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAELHAEPRGDDWR
VSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFMFQQVRVKPQDFAAITIPRSR
GEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGE
MGTTPSAPPQRNRRKSVHRVLAELDDESEPPENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAP
MAPPAVGGGEPCAAPCCCLPQEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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