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Report for CCDS15573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15573.1 Public Mus musculus 1 H3f3a 23 108 98 CCDS HistoryNCBI Gene:15078Re-query CCDS DB by CCDS ID:15573.1Re-query CCDS DB by GeneID:15078See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161308.7 ENSMUSP00000124509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161308.7Link to Ensembl Protein Viewer:ENSMUSP00000124509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161308Re-query CCDS DB by Protein ID:ENSMUSP00000124509
Original member Current member EBI ENSMUST00000162814.7 ENSMUSP00000125104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162814.7Link to Ensembl Protein Viewer:ENSMUSP00000125104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162814Re-query CCDS DB by Protein ID:ENSMUSP00000125104
Original member NCBI NM_008210.5 NP_032236.1 Updated not alive Link to Nucleotide Sequence:NM_008210.5Link to Protein Sequence:NP_032236.1Re-query CCDS DB by Nucleotide ID:NM_008210Re-query CCDS DB by Protein ID:NP_032236
Current member NCBI NM_008210.6 NP_032236.1 Accepted alive Link to Nucleotide Sequence:NM_008210.6Link to Protein Sequence:NP_032236.1Re-query CCDS DB by Nucleotide ID:NM_008210Re-query CCDS DB by Protein ID:NP_032236Link to BLAST:NP_032236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032236.1 136 P84244 136 100% 0 0

Chromosomal Locations for CCDS 15573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180803077 180803205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180810117 180810270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180811799 180811926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCCACCGGTGGTAAAGCACCCAGGAAACAACTGGCTACAA
AAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGT
GGCCCTCCGTGAAATCAGACGCTATCAGAAGTCCACTGAACTTCTGATCCGCAAGCTCCCCTTTCAGCGT
CTGGTGCGAGAAATTGCTCAGGACTTCAAAACAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGC
AGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGATACCAATCTGTGTGCTATCCATGCCAAACG
TGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGCGGAGAACGTGCTTAA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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