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Report for CCDS11021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11021.1 Public Homo sapiens 17 OR1A2 24 110 108 CCDS HistoryNCBI Gene:26189Re-query CCDS DB by CCDS ID:11021.1Re-query CCDS DB by GeneID:26189See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11021.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381951.1 ENSP00000371377.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381951.1Link to Ensembl Protein Viewer:ENSP00000371377.1Re-query CCDS DB by Nucleotide ID:ENST00000381951Re-query CCDS DB by Protein ID:ENSP00000371377
Original member Current member NCBI NM_012352.3 NP_036484.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012352.3Link to Protein Sequence:NP_036484.1Re-query CCDS DB by Nucleotide ID:NM_012352Re-query CCDS DB by Protein ID:NP_036484Link to BLAST:NP_036484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036484.1 309 Q9Y585 309 100% 0 0

Chromosomal Locations for CCDS 11021.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3197519 3198448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAGAAAGAAAATCAATCCTTTAACCTGGATTTTATTCTCCTGGGAGTTACTAGTCAGCAAGAACAGA
ATAATGTCTTCTTTGTGATTTTTTTGTGCATTTACCCCATCACACTGACTGGAAATCTGCTCATCATCTT
GGCCATCTGTGCTGACATTCGCCTTCACAACCCCATGTATTTTCTCCTTGCCAACCTCTCCTTGGTTGAC
ATCATCTTCTCATCCGTAACCATCCCTAAGGTGCTGGCCAACCATCTCTTGGGGAGCAAGTTCATCTCCT
TTGGGGGATGCCTAATGCAGATGTATTTCATGATAGCCTTGGCCAAGGCAGACAGCTATACCTTGGCTGC
AATGGCATACGATCGAGCTGTGGCCATCAGCTGCCCACTTCATTACACAACAATTATGAGTCCACGGTCT
TGTATCCTGCTTATTGCTGGGTCTTGGGTGATTGGAAACACCAGTGCTCTCCCCCACACTCTGCTCACAG
CTAGTTTGTCCTTCTGTGGCAACCAGGAAGTAGCCAATTTCTACTGTGACATTATGCCTTTGCTGAAGTT
GTCCTGTTCTGACGTCCACTTTAATGTGAAGATGATGTACCTAGGGGTCGGCGTTTTCTCTTTGCCATTA
CTATGCATCATTGTCTCCTATGTTCAGGTCTTTTCCACAGTCTTCCAAGTTCCATCTACCAAGAGTCTAT
TCAAAGCCTTCTGCACCTGTGGCTCCCACCTCACAGTTGTTTTTTTATATTATGGTACAACGATGGGCAT
GTATTTCCGCCCTCTGACCAGTTACAGCCCCAAAGATGCAGTGATAACTGTGATGTATGTGGCAGTGACC
CCAGCATTAAATCCTTTCATCTATAGTCTGAGAAATTGGGATATGAAGGCAGCCCTACAGAAACTCTTCA
GCAAGAGAATCTCCTCATAG

Translation (309 aa):
MKKENQSFNLDFILLGVTSQQEQNNVFFVIFLCIYPITLTGNLLIILAICADIRLHNPMYFLLANLSLVD
IIFSSVTIPKVLANHLLGSKFISFGGCLMQMYFMIALAKADSYTLAAMAYDRAVAISCPLHYTTIMSPRS
CILLIAGSWVIGNTSALPHTLLTASLSFCGNQEVANFYCDIMPLLKLSCSDVHFNVKMMYLGVGVFSLPL
LCIIVSYVQVFSTVFQVPSTKSLFKAFCTCGSHLTVVFLYYGTTMGMYFRPLTSYSPKDAVITVMYVAVT
PALNPFIYSLRNWDMKAALQKLFSKRISS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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