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Report for CCDS10545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10545.1 Public Homo sapiens 16 DEXI 24 110 108 CCDS HistoryNCBI Gene:28955Re-query CCDS DB by CCDS ID:10545.1Re-query CCDS DB by GeneID:28955See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 10545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331808.5 ENSP00000330509.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331808.5Link to Ensembl Protein Viewer:ENSP00000330509.4Re-query CCDS DB by Nucleotide ID:ENST00000331808Re-query CCDS DB by Protein ID:ENSP00000330509
Original member Current member EBI ENST00000469379.5 ENSP00000482265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469379.5Link to Ensembl Protein Viewer:ENSP00000482265.1Re-query CCDS DB by Nucleotide ID:ENST00000469379Re-query CCDS DB by Protein ID:ENSP00000482265
Original member Current member EBI ENST00000570440.2 ENSP00000493467.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570440.2Link to Ensembl Protein Viewer:ENSP00000493467.1Re-query CCDS DB by Nucleotide ID:ENST00000570440Re-query CCDS DB by Protein ID:ENSP00000493467
Original member Current member NCBI NM_014015.4 NP_054734.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014015.4Link to Protein Sequence:NP_054734.2Re-query CCDS DB by Nucleotide ID:NM_014015Re-query CCDS DB by Protein ID:NP_054734Link to BLAST:NP_054734.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054734.2 95 O95424 95 100% 0 0

Chromosomal Locations for CCDS 10545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10941718 10942005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGCTCGGCGCCCGGGTCGCGGCCCACCTGGACGCACTGGGCCCCCTGGTCCCCTACGTGCCGCCGCCGC
TGCTGCCCTCTATGTTCTACGTGGGCCTGTTCTTCGTCAATGTGCTGATCCTGTACTACGCCTTCCTCAT
GGAGTACATCGTCCTCAACGTGGGCCTCGTCTTCCTGCCCGAGGACATGGACCAGGCGCTCGTGGACCTC
GGCGTGCTCTCCGACCCCGGCTCGGGCCTTTACGATGCTGACTCGGAGCTCGACGTCTTTGATGCGTACT
TGGAGTAG

Translation (95 aa):
MLGARVAAHLDALGPLVPYVPPPLLPSMFYVGLFFVNVLILYYAFLMEYIVLNVGLVFLPEDMDQALVDL
GVLSDPGSGLYDADSELDVFDAYLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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