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Report for CCDS13130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13130.1 Public Homo sapiens 20 SNX5 24 110 108 CCDS HistoryNCBI Gene:27131Re-query CCDS DB by CCDS ID:13130.1Re-query CCDS DB by GeneID:27131See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377759.9 ENSP00000366988.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377759.9Link to Ensembl Protein Viewer:ENSP00000366988.3Re-query CCDS DB by Nucleotide ID:ENST00000377759Re-query CCDS DB by Protein ID:ENSP00000366988
Original member Current member EBI ENST00000377768.7 ENSP00000366998.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377768.7Link to Ensembl Protein Viewer:ENSP00000366998.3Re-query CCDS DB by Nucleotide ID:ENST00000377768Re-query CCDS DB by Protein ID:ENSP00000366998
Original member Current member NCBI NM_014426.4 NP_055241.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014426.4Link to Protein Sequence:NP_055241.1Re-query CCDS DB by Nucleotide ID:NM_014426Re-query CCDS DB by Protein ID:NP_055241Link to BLAST:NP_055241.1
Original member Current member NCBI NM_152227.3 NP_689413.1 Accepted alive Link to Nucleotide Sequence:NM_152227.3Link to Protein Sequence:NP_689413.1Re-query CCDS DB by Nucleotide ID:NM_152227Re-query CCDS DB by Protein ID:NP_689413Link to BLAST:NP_689413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055241.1 404 Q9Y5X3-1 404 100% 0 0
NP_689413.1 404 Q9Y5X3-1 404 100% 0 0

Chromosomal Locations for CCDS 13130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 17942357 17942407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17943110 17943195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17947486 17947645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17948890 17948976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17949064 17949103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17950132 17950207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17950291 17950396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17951500 17951595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17952587 17952710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17953996 17954117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17955365 17955475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17956933 17957037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 17968375 17968425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGG
ACCTGAATGTTGATCCCTCGCTTCAGATTGACATACCTGATGCGCTCAGTGAGAGAGACAAAGTCAAATT
TACAGTGCACACAAAGACCACACTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAA
GACTTTGTGTGGCTACATGACACTCTTATTGAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTC
CTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCAGAAACTGGGAGAAGGTGAAGGGTCTATGAC
CAAAGAAGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCGCTGTGTTTAAGAAGACTGTG
TCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGATCGCAACTTTCATG
TTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACTGGAGTTAAGGAGGTAGATGACTTCTTTGAG
CAAGAGAAGAACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGA
CCAGATCTCATAAAAATGTTGCCGATGACTATATCCACACCGCAGCCTGCTTACATAGCCTGGCTTTAGA
AGAGCCCACAGTCATCAAAAAGTACCTATTGAAGGTTGCTGAGCTATTTGAAAAACTAAGGAAAGTAGAG
GGTCGAGTTTCATCAGATGAAGATTTGAAGCTAACAGAGCTCCTCCGATACTACATGCTCAACATTGAAG
CTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAGAACTCAAACAAAGCTCTGGA
TAAGGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTGCCAGAAATTT
GAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTG
TATTGACTTGTTCAAGAATAACTGA

Translation (404 aa):
MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHE
DFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTV
SSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFE
QEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVE
GRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKF
EQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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