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Report for CCDS7997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7997.1 Public Homo sapiens 11 TMEM132A 24 110 108 CCDS HistoryNCBI Gene:54972Re-query CCDS DB by CCDS ID:7997.1Re-query CCDS DB by GeneID:54972See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000005286.8 ENSP00000005286.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000005286.8Link to Ensembl Protein Viewer:ENSP00000005286.4Re-query CCDS DB by Nucleotide ID:ENST00000005286Re-query CCDS DB by Protein ID:ENSP00000005286
Original member Current member NCBI NM_017870.4 NP_060340.2 Accepted alive Link to Nucleotide Sequence:NM_017870.4Link to Protein Sequence:NP_060340.2Re-query CCDS DB by Nucleotide ID:NM_017870Re-query CCDS DB by Protein ID:NP_060340Link to BLAST:NP_060340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060340.2 1024 Q24JP5-2 1024 100% 0 0

Chromosomal Locations for CCDS 7997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60924634 60924733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60927204 60927418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60927641 60927859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60928629 60928960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60930510 60930659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60931686 60931884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60931984 60932127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60933542 60933744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60934488 60934764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60935252 60935443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60935864 60936907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGTGCGCGCGGATGGCCGGTCGCACAACAGCGGCCCCTCGGGGGCCCTACGGCCCCTGGCTCTGCCTCC
TG
GTGGCCCTCGCCCTGGACGTCGTGAGAGTGGACTGTGGCCAGGCTCCCCTGGACCCTGTCTACCTGCC
G
GCAGCCCTGGAGCTCCTAGACGCCCCTGAACACTTCCGTGTGCAGCAGGTGGGCCACTACCCACCTGCC
AAC
TCCTCTCTGAGCTCCCGATCTGAGACCTTTCTGCTCCTACAGCCCTGGCCCAGGGCCCAGCCACTTC
TC
CGGGCCTCCTACCCACCTTTTGCCACTCAGCAGGTGGTCCCCCCTCGAGTCACTGAGCCCCACCAACG
G
CCAGTCCCATGGGACGTGCGGGCCGTTTCAGTGGAAGCGGCTGTGACTCCAGCAGAGCCCTACGCCCGG
GTT
CTCTTCCACCTCAAAGGGCAGGATTGGCCACCAGGGTCTGGCAGCCTGCCCTGTGCCCGGCTCCATG
CC
ACACACCCTGCCGGCACTGCTCACCAAGCCTGCCGCTTCCAGCCATCCCTGGGCGCCTGCGTGGTGGA
G
CTGGAGCTTCCCTCGCACTGGTTCTCACAGGCCTCCACCACACGGGCCGAGCTGGCCTACACGCTTGAG
CCT
GCAGCTGAGGGCCCTGGGGGCTGTGGCTCCGGCGAGGAGAACGACCCTGGGGAGCAGGCCCTCCCAG
TG
GGGGGTGTGGAGCTGCGCCCAGCAGACCCCCCGCAGTACCAGGAGGTACCTCTGGACGAGGCTGTGAC
T
CTGCGGGTGCCTGACATGCCAGTGCGGCCCGGCCAGCTCTTTAGTGCTACCCTCCTGCTTCGGCACAAC
TTC
ACAGCCAGCCTCCTGACCCTGCGGATCAAGGTGAAGAAGGGGCTGCATGTGACAGCCGCCCGCCCAG
CC
CAGCCCACACTCTGGACTGCCAAGCTGGACCGCTTCAAGGGCTCCAGGCACCACACCACCCTCATCAC
C
TGCCACCGTGCTGGGCTCACAGAGCCAGATTCCAGCAGTCCCCTTGAACTGTCTGAGTTCCTATGGGTG
GAC
TTTGTGGTGGAGAATAGCACTGGTGGGGGCGTAGCGGTCACTCGCCCCGTCACGTGGCAGCTGGAGT
AC
CCAGGCCAGGCCCCTGAAGCAGAGAAGGACAAAATGGTGTGGGAAATCCTGGTGTCTGAGCGGGACAT
C
AGAGCCCTTATCCCACTGGCCAAGGCTGAGGAGCTGGTGAATACAGCACCACTGACTGGAGTGCCCCAG
CAT
GTCCCCGTGCGCCTTGTCACTGTGGACGGCGGGGGGGCCTTGGTGGAGGTGACAGAGCATGTCGGCT
GC
GAGTCTGCCAACACACAGGTCCTGCAGGTGTCTGAGGCCTGTGATGCCGTGTTCGTGGCTGGCAAGGA
G
AGCCGGGGCGCCCGGGGGGTGCGAGTGGACTTCTGGTGGCGCCGGCTCCGCGCCTCGCTGCGGCTGACC
GTG
TGGGCCCCCCTGCTACCGCTGCGTATCGAGCTCACCGACACCACCCTCGAGCAGGTCCGCGGCTGGA
GG
GTACCTGGCCCTGCTGAAGGGCCTGCGGAACCCGCTGCAGAGGCGTCGGATGAGGCCGAGCGGCGCGC
C
CGTGGCTGCCACCTGCAGTACCAGCGGGCCGGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTG
GAC
GGCGGCCGCCGCCTCACGCACCTGCTTGGCCCCGACTGGCTGCTAGACGTGTCCCACCTCGTGGCGC
CA
CACGCCCGCGTGCTGGACTCGCGTGTAGCCTCTCTGGAGGGTGGCCGTGTCGTGGTGGGCCGGGAGCC
C
GGTGTCACCTCCATTGAGGTGCGTTCCCCACTGTCTGACTCCATCCTGGGGGAGCAGGCGCTGGCTGTG
ACG
GACGACAAGGTCTCAGTGCTGGAGCTGAGGGTGCAGCCAGTGATGGGCATCTCGCTGACCTTGAGCC
GG
GGCACTGCCCACCCCGGGGAGGTCACAGCTACGTGCTGGGCACAGTCAGCCCTTCCCGCCCCAAAGCA
G
GAGGTGGCCCTCTCCCTATGGCTGTCCTTCTCTGATCACACTGTGGCCCCAGCTGAGCTCTACGACCGC
CGT
GACCTGGGACTGTCCGTCTCAGCCGAGGAGCCTGGTGCCATCCTGCCAGCTGAGGAGCAGGGTGCCC
AG
CTCGGGGTGGTGGTGAGTGGGGCAGGCGCCGAGGGGCTGCCGCTGCATGTGGCTCTGCACCCGCCCGA
G
CCCTGCCGCCGGGGCCGCCACCGTGTGCCTCTGGCCTCTGGCACCGCCTGGCTGGGGCTGCCCCCTGCC
TCC
ACTCCAGCCCCTGCTCTCCCATCCAGCCCTGCTTGGAGCCCACCAGCCACAGAAGCCACCATGGGTG
GT
AAACGGCAGGTGGCAGGCAGTGTCGGGGGCAACACAGGTGTGAGGGGCAAGTTTGAGCGGGCAGAGGA
G
GAGGCCAGGAAGGAGGAGACCGAAGCCAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGATGGTCCCTGCC
CCT
CAGCATGTCACTGAGCTAGAGCTGGGCATGTACGCCCTGCTGGGAGTCTTCTGCGTGGCCATCTTCA
TC
TTCTTGGTCAATGGTGTGGTCTTCGTCCTGCGCTATCAGCGCAAAGAACCTCCCGACAGTGCCACTGA
C
CCCACCTCCCCCCAGCCCCACAACTGGGTCTGGCTGGGCACTGACCAGGAGGAACTGAGCCGCCAGCTG
GAC
CGGCAGTCCCCTGGCCCGCCCAAGGGGGAGGGGAGCTGCCCCTGTGAGAGTGGGGGAGGAGGGGAGG
CC
CCTACCCTGGCCCCTGGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGCCCGAAAGGAGGC
T
GGGGGGCGGCGGAAGCGAGTAGAGTTTGTGACATTTGCGCCAGCCCCTCCAGCCCAGTCACCTGAGGAG
CCT
GTAGGGGCCCCTGCTGTGCAGTCCATCCTTGTGGCAGGCGAGGAGGACATCCGCTGGGTGTGTGAGG
AC
ATGGGGCTGAAGGACCCTGAGGAGCTTCGCAACTACATGGAGAGGATCCGGGGCAGCTCCTGA


Translation (1024 aa):
MCARMAGRTTAAPRGPYGPWLCLLVALALDVVRVDCGQAPLDPVYLPAALELLDAPEHFRVQQVGHYPPA
N
SSLSSRSETFLLLQPWPRAQPLLRASYPPFATQQ
VVPPRVTEPHQRPVPWDVRAVSVEAAVTPAEPYAR
V
LFHLKGQDWPPGSGSLPCARLHATHPAGTAHQACRFQ
PSLGACVVELELPSHWFSQASTTRAELAYTLE
P
AAEGPGGCGSGEENDPGEQALPVGGVELRPADPPQYQEVPLDEAVTLRVPDMPVRPGQLFSATLLLRHN
F
TASLLTL
RIKVKKGLHVTAARPAQPTLWTAKLDRFKGSRHHTTLITCHRAGLTEPDSSSPLELSEFLWV
D
FVVENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSERDIRALIPLAK
AEELVNTAPLTGVPQ
H
VPVRLVTVDGGGALVEVTEHVGCESANTQVLQ
VSEACDAVFVAGKESRGARGVRVDFWWRRLRASLRLT
V
WAPLLPLRIELTDTTLEQVRGWRVPGPAE
GPAEPAAEASDEAERRARGCHLQYQRAGVRFLAPFAAHPL
D
GGRRLTHLLGPDWLLDVSHLVAPHARVLDSRVASLEGGRVVVGREPGVTSIE
VRSPLSDSILGEQALAV
T
DDKVSVLELRVQPVMGISLTLSRGTAHPGEVTATCWAQSALPAPKQ
EVALSLWLSFSDHTVAPAELYDR
R
DLGLSVSAEEPGAILPAEEQGAQLGVVVSGAGAEGLPLHVALHPPEPCRRGRHRVPLASGTAWLGLPPA
S
TPAPALPSSPAWSPPATEATMGGKRQVAGSVGGNTGVRGKFERAEEEARKEETEAREEEEEEEEEMVPA
P
QHVTELELGMYALLGVFCVAIFIFLVNGVVFVLRYQRKEPPDSATDPTSPQPHNWVWLGTDQEELSRQL
D
RQSPGPPKGEGSCPCESGGGGEAPTLAPGPPGGTTSSSSTLARKEAGGRRKRVEFVTFAPAPPAQSPEE
P
VGAPAVQSILVAGEEDIRWVCEDMGLKDPEELRNYMERIRGSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser