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Report for CCDS5358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5358.1 Public Homo sapiens 7 TMEM106B 24 110 108 CCDS HistoryNCBI Gene:54664Re-query CCDS DB by CCDS ID:5358.1Re-query CCDS DB by GeneID:54664See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5358.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396667.7 ENSP00000379901.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396667.7Link to Ensembl Protein Viewer:ENSP00000379901.2Re-query CCDS DB by Nucleotide ID:ENST00000396667Re-query CCDS DB by Protein ID:ENSP00000379901
Original member Current member EBI ENST00000396668.8 ENSP00000379902.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396668.8Link to Ensembl Protein Viewer:ENSP00000379902.3Re-query CCDS DB by Nucleotide ID:ENST00000396668Re-query CCDS DB by Protein ID:ENSP00000379902
Original member Current member EBI ENST00000444443.6 ENSP00000401302.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444443.6Link to Ensembl Protein Viewer:ENSP00000401302.2Re-query CCDS DB by Nucleotide ID:ENST00000444443Re-query CCDS DB by Protein ID:ENSP00000401302
Original member Current member EBI ENST00000704455.1 ENSP00000515905.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704455.1Link to Ensembl Protein Viewer:ENSP00000515905.1Re-query CCDS DB by Nucleotide ID:ENST00000704455Re-query CCDS DB by Protein ID:ENSP00000515905
Original member Current member NCBI NM_001134232.2 NP_001127704.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134232.2Link to Protein Sequence:NP_001127704.1Re-query CCDS DB by Nucleotide ID:NM_001134232Re-query CCDS DB by Protein ID:NP_001127704Link to BLAST:NP_001127704.1
Original member Current member NCBI NM_018374.4 NP_060844.2 Accepted alive Link to Nucleotide Sequence:NM_018374.4Link to Protein Sequence:NP_060844.2Re-query CCDS DB by Nucleotide ID:NM_018374Re-query CCDS DB by Protein ID:NP_060844Link to BLAST:NP_060844.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127704.1 274 Q9NUM4 274 100% 0 0
NP_060844.2 274 Q9NUM4 274 100% 0 0

Chromosomal Locations for CCDS 5358.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12214811 12215027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12218458 12218521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12224226 12224385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12229679 12229819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12230389 12230438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12231062 12231115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12231837 12231975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGGAAAGTCTCTTTCTCATTTGCCTTTGCATTCAAGCAAAGAAGATGCTTATGATGGAGTCACATCTG
AAAACATGAGGAATGGACTGGTTAATAGTGAAGTCCATAATGAAGATGGAAGAAATGGAGATGTCTCTCA
GTTTCCATATGTGGAATTTACAGGAAGAGATAGTGTCACCTGCCCTACTTGTCAGGGAACAGGAAGAATT
CCTAGGGGGCAAGAAAACCAACTGGTGGCATTGATTCCATATAGTGATCAGAGATTAAGGCCAAGAAGAA
CAAAGCTGTATGTGATGGCTTCTGTGTTTGTCTGTCTACTCCTTTCTGGATTGGCTGTGTTTTTCCTTTT
CCCTCGCTCTATCGACGTGAAATACATTGGTGTAAAATCAGCCTATGTCAGTTATGATGTTCAGAAGCGT
ACAATTTATTTAAATATCACAAACACACTAAATATAACAAACAATAACTATTACTCTGTCGAAGTTGAAA
ACATCACTGCCCAAGTTCAATTTTCAAAAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATTAT
TGGTCCACTTGATATGAAACAAATTGATTACACAGTACCTACCGTTATAGCAGAGGAAATGAGTTATATG
TATGATTTCTGTACTCTGATATCCATCAAAGTGCATAACATAGTACTCATGATGCAAGTTACTGTGACAA
CAACATACTTTGGCCACTCTGAACAGATATCCCAGGAGAGGTATCAGTATGTCGACTGTGGAAGAAACAC
AACTTATCAGTTGGGGCAGTCTGAATATTTAAATGTACTTCAGCCACAACAGTAA

Translation (274 aa):
MGKSLSHLPLHSSKEDAYDGVTSENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRI
PRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKR
TIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVIAEEMSYM
YDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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