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Report for CCDS7383.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
7383.1 |
Public |
Homo sapiens |
10 |
SHLD2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54537](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:7383.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:54537](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 7383.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000298784.5 |
ENSP00000298784.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000298784.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000298784.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000298784](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000298784](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377158.1 |
NP_001364087.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377158.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364087.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377158](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364087](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364087.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377159.1 |
NP_001364088.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377159.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364088.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377159](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364088](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364088.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_019054.3 |
NP_061927.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_019054.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061927.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_019054](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061927](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061927.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 7383.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2508 nt): ATGAGTGGAGGATCTCAAGTCCACATTTTTTGGGGTGCTCCAATTGCTCCACTGAAAATCACAGTATCAG AAGACACAGCTTCTTTAATGTCTGTTGCTGACCCCTGGAAAAAAATTCAGCTTTTATACAGTCAACATTC TTTATATCTGAAGGATGAAAAACAGCACAAAAATCTTGAAAACTATAAAGTCCCAGAATCTATTGGTTCT CCAGATCTTAGTGGTCATTTCTTAGCAAACTGTATGAATAGACATGTTCATGTGAAAGATGACTTTGTAC GTTCTGTTTCTGAAACACAGAATATAGAATCCCAGAAGATTCACTCCTCTAGACTGAGTGATATAACTAG CTCTAATATGCAAATATGTGGATTTAAAAGCACAGTTCCGCATTTCACCGAAGAAGAAAAGTATCAAAAG CTTCTCAGTGAAAATAAAATTAGAGATGAACAGCCTAAACATCAGCCAGATATATGTGGTAAGAACTTTA ACACAAATTTGTTTCAGTTGGGCCATAAATGTGCAGCTGTGTTGGATTTGGTTTGTAGTACTGAAAAAAT TAATATAGGGCCTGAAGTGGTACAAAGAGAGTGTGTGCCAACAGAATATCATGAAATACAAAACCAGTGT TTGGGATTATTTTCCTCGAACGCAGTAGATAAGTCAAGGTCTGAAGCAGCAGTTAGGAAGGTCTCAGACC TTAAAATATCAACTGATACAGAATTTCTCAGTATAATTACCTCCAGCCAGGTTGCTTTTTTAGCTCAAAA GAAAGATAAAAGGCGGAGTCCTGTAAATAAAGGGAATGTAAACATGGAGACTGAACCAAAGGCAAGTTAC GGGGAGATAAGAATACCTGAAGAGAATTCGATTCAGCTTGATGGTTTTACAGAAGCATATGAAAGTGGAC AAAACCAAGCATATTCCCTTGAACTTTTTAGTCCTGTTTGTCCTAAAACAGAAAATAGCCGCATTCACAT AAACTCTGATAAAGGTCTTGAAGAACATACAGGATCTCAAGAACTTTTCAGTTCTGAAGATGAACTGCCA CCAAATGAGATACGTATTGAGTTGTGTAGCTCAGGAATACTGTGTTCCCAACTAAATACCTTCCACAAAA GTGCTATTAAAAGAAGCTGTACCTCTGAAGATAAAGTGGGCCAGTCTGAAGCTCTATCTAGAGTCCTTCA AGTAGCTAAGAAAATGAAGTTGATTTCTAATGGAGGAGATTCTGCTGTAGAAATGGATCGGAGAAATGTG TCTGAATTTAAGAGTATTAAAAAAACATCATTAATAAAAAACTGTGATTCTAAAAGCCAGAAGTATAATT GTTTAGTCATGGTGCTATCTCCATGCCATGTGAAGGAAATAAACATAAAATTCGGACCAAATTCTGGCTC TAAAGTGCCTTTAGCAACAGTTACAGTAATTGATCAATCAGAAACTAAGAAGAAGGTTTTTCTGTGGAGG ACTGCAGCATTTTGGGCATTTACAGTGTTTCTTGGAGATATAATTTTACTCACAGATGTTGTTATTCATG AGGACCAATGGATTGGCGAGACAGTACTACAATCAACATTTAGCAGTCAGTTATTAAATCTTGGGAGTTA TTCATCTATTCAGCCTGAAGAATATTCCAGTGTAGTTAGTGAAGTTGTACTTCAAGACTTACTGGCATAT GTGTCCTCAAAACATTCCTACCTCAGAGATCTTCCTCCGAGGCAGCCTCAGAGGGTGAACAGTATAGACT TTGTAGAATTGGAGCACCTTCAACCTGATGTATTAGTCCACGCAGTACTAAGAGTTGTTGATTTCACTAT ACTGACAGAGGCAGTATACAGTTATAGAGGACAGAAGCAGAAAAAAGTTATGTTAACAGTGGAACAGGCC CAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGGAGCAGCCTGGTACCCTCAACTTCAAAGGAAAA AAGGAGTGGTTCTGATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTATTACAGCATCTCAGAAGATAGC GCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCGTATATACTGGTTGTGCA AAATGTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCCATTTA CTATGAAGAAAATATATTATAGGCCAGCGTTAATGACTGCCATTGATGGAAGACATGATGTTTGTATCCG TGTAGAATCAAAGCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTT CCTTCCTCAGAGATCACCTATGGGATGGTCGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAG AACCTTGTGTATTAAAGATTCAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTT CTCCCTCCTGGATTTTTATCCTGACATTGTAAAGCATGGAGCCAATGCCCGTCTCTGA
Translation (835 aa): MSGGSQVHIFWGAPIAPLKITVSEDTASLMSVADPWKKIQLLYSQHSLYLKDEKQHKNLENYKVPESIGS PDLSGHFLANCMNRHVHVKDDFVRSVSETQNIESQKIHSSRLSDITSSNMQICGFKSTVPHFTEEEKYQK LLSENKIRDEQPKHQPDICGKNFNTNLFQLGHKCAAVLDLVCSTEKINIGPEVVQRECVPTEYHEIQNQC LGLFSSNAVDKSRSEAAVRKVSDLKISTDTEFLSIITSSQVAFLAQKKDKRRSPVNKGNVNMETEPKASY GEIRIPEENSIQLDGFTEAYESGQNQAYSLELFSPVCPKTENSRIHINSDKGLEEHTGSQELFSSEDELP PNEIRIELCSSGILCSQLNTFHKSAIKRSCTSEDKVGQSEALSRVLQVAKKMKLISNGGDSAVEMDRRNV SEFKSIKKTSLIKNCDSKSQKYNCLVMVLSPCHVKEINIKFGPNSGSKVPLATVTVIDQSETKKKVFLWR TAAFWAFTVFLGDIILLTDVVIHEDQWIGETVLQSTFSSQLLNLGSYSSIQPEEYSSVVSEVVLQDLLAY VSSKHSYLRDLPPRQPQRVNSIDFVELEHLQPDVLVHAVLRVVDFTILTEAVYSYRGQKQKKVMLTVEQA QDQHYALVLWGPGAAWYPQLQRKKGVVLIKAQISELAFPITASQKIALNAHSSLKSIFSSLPNIVYTGCA KCGLELETDENRIYKQCFSCLPFTMKKIYYRPALMTAIDGRHDVCIRVESKLIEKILLNISADCLNRVIV PSSEITYGMVVADLFHSLLAVSAEPCVLKIQSLFVLDENSYPLQQDFSLLDFYPDIVKHGANARL
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