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Report for CCDS30789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30789.1 Public Homo sapiens 1 TMEM167B 24 110 108 CCDS HistoryNCBI Gene:56900Re-query CCDS DB by CCDS ID:30789.1Re-query CCDS DB by GeneID:56900See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338272.9 ENSP00000342148.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338272.9Link to Ensembl Protein Viewer:ENSP00000342148.7Re-query CCDS DB by Nucleotide ID:ENST00000338272Re-query CCDS DB by Protein ID:ENSP00000342148
Original member Current member NCBI NM_020141.4 NP_064526.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020141.4Link to Protein Sequence:NP_064526.1Re-query CCDS DB by Nucleotide ID:NM_020141Re-query CCDS DB by Protein ID:NP_064526Link to BLAST:NP_064526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064526.1 74 Q9NRX6 74 100% 0 0

Chromosomal Locations for CCDS 30789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109090873 109090882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109092890 109093021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109094417 109094499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGACGAACGTGTACTCCTTGGATGGGATTCTGGTGTTTGGTTTGCTCTTTGTTTGCACCTGTGCCTACT
TCAAGAAAGTACCTCGTCTCAAAACCTGGCTGCTATCAGAGAAGAAGGGTGTTTGGGGTGTGTTTTACAA
AGCCGCTGTGATTGGAACCAGGCTGCATGCTGCTGTGGCAATTGCTTGTGTTGTAATGGCCTTTTACGTC
CTGTTTATAAAATGA

Translation (74 aa):
MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKTWLLSEKKGVWGVFYKAAVIGTRLHAAVAIACVVMAFYV
LFIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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