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Report for CCDS47051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47051.1 Public Homo sapiens 4 SLAIN2 24 110 108 CCDS HistoryNCBI Gene:57606Re-query CCDS DB by CCDS ID:47051.1Re-query CCDS DB by GeneID:57606See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47051.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264313.11 ENSP00000264313.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264313.11Link to Ensembl Protein Viewer:ENSP00000264313.5Re-query CCDS DB by Nucleotide ID:ENST00000264313Re-query CCDS DB by Protein ID:ENSP00000264313
Original member Current member NCBI NM_020846.2 NP_065897.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020846.2Link to Protein Sequence:NP_065897.1Re-query CCDS DB by Nucleotide ID:NM_020846Re-query CCDS DB by Protein ID:NP_065897Link to BLAST:NP_065897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065897.1 581 Q9P270 581 100% 0 0

Chromosomal Locations for CCDS 47051.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48341740 48342128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48369849 48369997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48377896 48378060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48379690 48379848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48382568 48382927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48383647 48383784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48420125 48420443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48422011 48422077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGAGGACGTTAACTCCAACGTGAACGCGGACCAGGAGGTGCGGAAGCTGCAGGAGCTGGTGAAGAAGC
TGGAGAAGCAGAACGAACAGCTGAGGAGCCGCTCGGGGGCCGTGCAGGGCGCCGGCTCCCTTGGGCCCGG
CAGCCCGGTTCGGGCCGGCGCGTCCATTCCCTCCTCCGGCGCGGCGTCTCCTCGGGGCTTCCCCTTGGGC
CTCAGCGCCAAGTCGGGCGGCGGGCCCGGGTCGGGCCCGAGGCGGACGAGTAGCGAAGAGCTGCGGGACG
CCACCTCCTTGCTAGCGGCGGGCGAGGGCGGCTTGCTGGACGAGGTGGAGCCGCTGCGGCCCGACGAGCT
GGAGCGCCTGTCAGGCTGGGAGGAGGAGGAGGAGAGCTGGCTGTATTCATCACCAAAGAAAAAACTTACA
CCAATGCAGAAATCGGTTAGTCCATTAGTTTGGTGCAGGCAAGTTTTGGATTACCCAAGTCCTGATGTTG
AGTGTGCTAAAAAATCTCTTATCCACAAACTTGATCAAACTATGTCAGCTCTCAAGAGGCAGAATTTATA
TAATAATCCTTTCAACTCTATGAGTTACACCAGTCCTTACAGTCCAAATGCCAGTAGCCCATACAGCAGT
GGCTTCAATTCTCCATCCTCAACCCCAGTGCGACCTCCTATAGTCAAACAGCTTATACTTCCTGGAAATT
CAGGTAACTTGAAAAGCTCAGACAGAAATCCTCCACTCAGTCCTCAGTCCTCTATAGATAGTGAGTTAAG
TGCTTCAGAATTAGATGAAGATTCAATTGGATCCAATTATAAGCTAAATGATGTAACTGATGTACAGATT
CTAGCCCGGATGCAGGAAGAAAGTCTCCGGCAAGAATATGCAGCCACCACGTCTCGGCGCAGTTCTGGTT
CATCTTGCAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTGATGCACAAAGTTTAGATGATGA
AGATGACAATATGCATCATGCAGTATACCCTGCTGTTAACAGGTTTTCACCATCACCACGCAATTCACCT
CGACCGTCACCTAAGCAGTCACCCAGAAATTCACCTCGTTCACGATCTCCTGCTCGGGGAATAGAATATA
GTAGAGTGTCCCCACAGCCTATGATTAGCCGCTTACAGCAACCTCGCCTTTCACTTCAAGGCCATCCCAC
AGATTTACAGACAAGCAATGTTAAAAATGAAGAAAAACTAAGACGCAGTCTTCCAAACCTGTCCCGAACA
TCTAATACACAAGTTGACTCAGTGAAAAGCAGCAGAAGTGACTCAAATTTTCAAGTGCCAAACGGAGGAA
TACCTCGTATGCAACCTCAGGCTTCAGCCATACCTTCTCCAGGCAAATTCCGTTCCCCTGCAGCACCATC
TCCTTTGGCTCTTCGGCAACCAGTGAAAGCATTTAGTAACCATGGCTCTGGTTCTCCTGGTAGCCAAGAA
ATAACACAGCTCACACAAACCACCTCCTCACCTGGGCCTCCTATGGTTCAGAGCACAGTCTCAGCAAATC
CTCCCAGCAATATCAACAGCGCTACTCTAACCAGACCTGCAGGGACAACTGCAATGAGAAGTGGCTTGCC
CAGACCCAGTGCCCCTTCTGCTGGGGGCATACCAGTGCCTCGCAGCAAACTTGCACAGCCTGTTCGCAGA
TCCTTGCCAGCTCCTAAAACCTATGGTAGCATGAAAGATGACAGTTGGAAAGATGGCTGTTACTGA

Translation (581 aa):
MEDVNSNVNADQEVRKLQELVKKLEKQNEQLRSRSGAVQGAGSLGPGSPVRAGASIPSSGAASPRGFPLG
LSAKSGGGPGSGPRRTSSEELRDATSLLAAGEGGLLDEVEPLRPDELERLSGWEEEEESWLYSSPKKKLT
PMQKSVSPLVWCRQVLDYPSPDVECAKKSLIHKLDQTMSALKRQNLYNNPFNSMSYTSPYSPNASSPYSS
GFNSPSSTPVRPPIVKQLILPGNSGNLKSSDRNPPLSPQSSIDSELSASELDEDSIGSNYKLNDVTDVQI
LARMQEESLRQEYAATTSRRSSGSSCNSTRRGTFSDQELDAQSLDDEDDNMHHAVYPAVNRFSPSPRNSP
RPSPKQSPRNSPRSRSPARGIEYSRVSPQPMISRLQQPRLSLQGHPTDLQTSNVKNEEKLRRSLPNLSRT
SNTQVDSVKSSRSDSNFQVPNGGIPRMQPQASAIPSPGKFRSPAAPSPLALRQPVKAFSNHGSGSPGSQE
ITQLTQTTSSPGPPMVQSTVSANPPSNINSATLTRPAGTTAMRSGLPRPSAPSAGGIPVPRSKLAQPVRR
SLPAPKTYGSMKDDSWKDGCY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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