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Report for CCDS33261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33261.1 Public Homo sapiens 2 PDCL3 24 110 108 CCDS HistoryNCBI Gene:79031Re-query CCDS DB by CCDS ID:33261.1Re-query CCDS DB by GeneID:79031See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264254.11 ENSP00000264254.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264254.11Link to Ensembl Protein Viewer:ENSP00000264254.6Re-query CCDS DB by Nucleotide ID:ENST00000264254Re-query CCDS DB by Protein ID:ENSP00000264254
Original member Current member NCBI NM_024065.5 NP_076970.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024065.5Link to Protein Sequence:NP_076970.1Re-query CCDS DB by Nucleotide ID:NM_024065Re-query CCDS DB by Protein ID:NP_076970Link to BLAST:NP_076970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076970.1 239 Q9H2J4 239 100% 0 0

Chromosomal Locations for CCDS 33261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 100563068 100563073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100566503 100566629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100568931 100569021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100569578 100569721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100571590 100571798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 100576354 100576496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCAGGACCCCAACGCAGACACTGAATGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGG
AAAGTCTGAAAGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCGCATCCTCCAGCAGTCAGTGGTGAAAAC
ATATGAAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCT
ATTGAAATGTACAGACGGCGGAGACTGGCTGAGTGGAAAGCAACTAAACTGAAGAATAAATTCGGAGAAG
TTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTACCAAAGCTGGCGAGGGCTTGTGGGTCATCTT
GCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACCTCAGTGGACTTGCCAGGAAG
TTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGATAGGAATCTGC
CCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCAT
GAACCTGACAAGAGATGAGTTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACAGACCTGGAGGAA
AACCCTAAGAAGCCGATTGAAGACGTGTTGCTGTCCTCAGTGCGGCGCTCTGTCCTCATGAAGAGGGACA
GCGATTCCGAGGGTGACTGA

Translation (239 aa):
MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERA
IEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARK
FPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEE
NPKKPIEDVLLSSVRRSVLMKRDSDSEGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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