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Report for CCDS25333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25333.1 Public Mus musculus 11 Plxdc1 23 108 98 CCDS HistoryNCBI Gene:72324Re-query CCDS DB by CCDS ID:25333.1Re-query CCDS DB by GeneID:72324See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017561.14 ENSMUSP00000017561.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017561.14Link to Ensembl Protein Viewer:ENSMUSP00000017561.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000017561Re-query CCDS DB by Protein ID:ENSMUSP00000017561
Original member Current member NCBI NM_028199.3 NP_082475.3 Accepted alive Link to Nucleotide Sequence:NM_028199.3Link to Protein Sequence:NP_082475.3Re-query CCDS DB by Nucleotide ID:NM_028199Re-query CCDS DB by Protein ID:NP_082475Link to BLAST:NP_082475.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082475.3 500 Q91ZV7-1 500 100% 0 0

Chromosomal Locations for CCDS 25333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97924488 97924607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97925813 97925973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97928434 97928469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97932207 97932339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97933975 97934035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97938530 97938611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97940813 97940908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97953883 97953982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97954751 97954869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97955401 97955523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97956099 97956168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97956423 97956566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97978503 97978681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97986238 97986316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGCGAGCTCAGCTCTGGTTGCTGCAGTTGCTGCTACTCCGCGGGGCCGCGCGCGCGCTCAGTCCCGCAA
CACCCGCAGGTCACAATGAAGGTCAAGACTCTGCATGGACTGCCAAGAGGACCAGGCAAGGCTGGAGTCG
GAGACCCCGAGAGAGCCCCGCGCAGGTGTTGAAGCCAGGCAAGACCCAGCTAAGCCAGGACTTGGGTGGG
GGCTCCCTGGCCATCGACACACTTCCGGACAACAGGACTCGGGTGGTGGAGGACAACCATAACTACTACG
TGTCCCGTGTCTACGGCCCTGGTGAGAAACAAAGCCAGGATCTGTGGGTGGACCTGGCTGTGGCCAACCG
GAGTCATGTGAAGATCCACAGGATCCTCTCCAGTTCTCACCGACAGGCTTCAAGAGTGGTCTTGTCCTTT
GATTTCCCTTTCTATGGGCATCCTCTGCGGCAGATCACCATAGCAACCGGAGGCTTCATCTTCATGGGGG
ACATGCTCCACCGGATGCTCACAGCTACGCAGTATGTGGCACCCCTGATGGCCAACTTCAACCCCGGCTA
CTCTGACAACTCCACGGTTGCTTACTTTGACAATGGGACCGTTTTTGTGGTTCAGTGGGATCATGTTTAC
CTCCAGGACCGGGAGGACAGGGGCAGCTTCACCTTCCAGGCGGCCCTACACCGAGATGGCCGCATTGTCT
TCGGCTACAAAGAGATCCCCATGGCTGTCCTGGATATCAGCTCTGCCCAGCACCCTGTCAAGGCAGGCCT
GTCCGACGCTTTCATGATTCTCAATTCATCCCCAGAGGTGCCAGCGTCTCAGAGACGGACCATTTTCGAA
TACCACCGTGTGGAACTGGACTCCAGCAAGATCACCACCACCTCGGCCGTGGAGTTCACCCCGTTGCCAA
CCTGCCTCCAGCATCAGAGTTGCGACACCTGCGTGTCCTCGAATCTAACCTTCAACTGCAGCTGGTGCCA
TGTCCTGCAGAGGTGTTCCAGTGGCTTTGACCGATACCGCCAAGAATGGCTGACCTACGGCTGTGCCCAG
GAGGCAGAAGGCAAGACATGCGAGGACTTCCAGGATGATAGCCACTACTCAGCCTCCCCTGACAGCTCCT
TCAGCCCCTTTAATGGCGACTCCACTACCTCTTCCTCCCTCTTCATTGACAGCCTCACCACAGAAGATGA
CACCAAGTTGAATCCCTACGCAGAAGGAGACGGCCTTCCGGACCACTCATCTCCGAAGTCCAAGGGTCCT
CCCGTGCACCTGGGCACCATCGTGGGTATCGTGCTTGCTGTACTCCTGGTAGCGGCCATCATCCTGGCTG
GGATTTACATCAGTGGCCACCCTAATTCCAATGCTGCACTCTTCTTCATCGAGCGGAGACCTCACCACTG
GCCAGCCATGAAGTTCCATAACCACCCCAACCACTCTACCTACACCGAGGTAGAGCCCTCCGGGCACGAG
AAGGAAGGCTTCGTGGAGGCCGAGCAGTGCTGA

Translation (500 aa):
MRAQLWLLQLLLLRGAARALSPATPAGHNEGQDSAWTAKRTRQGWSRRPRESPAQVLKPGKTQLSQDLGG
GSLAIDTLPDNRTRVVEDNHNYYVSRVYGPGEKQSQDLWVDLAVANRSHVKIHRILSSSHRQASRVVLSF
DFPFYGHPLRQITIATGGFIFMGDMLHRMLTATQYVAPLMANFNPGYSDNSTVAYFDNGTVFVVQWDHVY
LQDREDRGSFTFQAALHRDGRIVFGYKEIPMAVLDISSAQHPVKAGLSDAFMILNSSPEVPASQRRTIFE
YHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSNLTFNCSWCHVLQRCSSGFDRYRQEWLTYGCAQ
EAEGKTCEDFQDDSHYSASPDSSFSPFNGDSTTSSSLFIDSLTTEDDTKLNPYAEGDGLPDHSSPKSKGP
PVHLGTIVGIVLAVLLVAAIILAGIYISGHPNSNAALFFIERRPHHWPAMKFHNHPNHSTYTEVEPSGHE
KEGFVEAEQC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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