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Report for CCDS8706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8706.1 Public Homo sapiens 12 BHLHE41 24 110 108 CCDS HistoryNCBI Gene:79365Re-query CCDS DB by CCDS ID:8706.1Re-query CCDS DB by GeneID:79365See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242728.5 ENSP00000242728.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242728.5Link to Ensembl Protein Viewer:ENSP00000242728.4Re-query CCDS DB by Nucleotide ID:ENST00000242728Re-query CCDS DB by Protein ID:ENSP00000242728
Original member Current member NCBI NM_030762.3 NP_110389.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030762.3Link to Protein Sequence:NP_110389.1Re-query CCDS DB by Nucleotide ID:NM_030762Re-query CCDS DB by Protein ID:NP_110389Link to BLAST:NP_110389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110389.1 482 Q9C0J9 482 100% 0 0

Chromosomal Locations for CCDS 8706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 26122066 26123168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26123630 26123741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26124072 26124179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26124519 26124582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26124718 26124779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGACGAAGGAATTCCTCATTTGCAAGAGAGACAGTTACTGGAACATAGAGATTTTATAGGACTGGACT
ATTCCTCTTTGTATATGTGTAAACCCAAAAGGAGCATGAAACGAGACGACACCAAGGATACCTACAAATT
ACCGCACAGATTAATAGAAAAGAAAAGAAGAGACCGAATTAATGAATGCATTGCTCAGCTGAAAGATTTA
CTGCCTGAACATCTGAAATTGACAACTCTGGGACATCTGGAGAAAGCTGTAGTCTTGGAATTAACTTTGA
AACACTTAAAAGCTTTAACCGCCTTAACCGAGCAACAGCATCAGAAGATAATTGCTTTACAGAATGGGGA
GCGATCTCTGAAATCGCCCATTCAGTCCGACTTGGATGCGTTCCACTCGGGATTTCAAACATGCGCCAAA
GAAGTCTTGCAATACCTCTCCCGGTTTGAGAGCTGGACACCCAGGGAGCCGCGGTGTGTCCAGCTGATCA
ACCACTTGCACGCCGTGGCCACCCAGTTCTTGCCCACCCCGCAGCTGTTGACTCAACAGGTCCCTCTGAG
CAAAGGCACCGGCGCTCCCTCGGCCGCCGGGTCCGCGGCCGCCCCCTGCCTGGAGCGCGCGGGGCAGAAG
CTGGAGCCCCTCGCCTACTGCGTGCCCGTCATCCAGCGGACTCAGCCCAGCGCCGAGCTCGCCGCCGAGA
ACGACACGGACACCGACAGCGGCTACGGCGGCGAAGCCGAGGCCCGGCCGGACCGCGAGAAAGGCAAAGG
CGCGGGGGCGAGCCGCGTCACCATCAAGCAGGAGCCTCCCGGGGAGGACTCGCCGGCGCCCAAGAGGATG
AAGCTGGATTCCCGCGGCGGCGGCAGCGGCGGCGGCCCGGGGGGCGGCGCGGCGGCGGCGGCAGCCGCGC
TTCTGGGGCCCGACCCTGCCGCCGCGGCCGCGCTGCTGAGACCCGACGCCGCCCTGCTCAGCTCGCTGGT
GGCGTTCGGCGGAGGCGGAGGCGCGCCCTTCCCGCAGCCCGCGGCCGCCGCGGCCCCCTTCTGCCTGCCC
TTCTGCTTCCTCTCGCCTTCTGCAGCTGCCGCCTACGTGCAGCCCTTCCTGGACAAGAGCGGCCTGGAGA
AGTATCTGTACCCGGCGGCGGCTGCCGCCCCGTTCCCGCTGCTATACCCCGGCATCCCCGCCCCGGCGGC
AGCCGCGGCAGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGCGTTCCCCTGCCTGTCCTCGGTGTTGTCG
CCCCCTCCCGAGAAGGCGGGCGCCGCCGCCGCGACCCTCCTGCCGCACGAGGTGGCGCCCCTTGGGGCGC
CGCACCCCCAGCACCCGCACGGCCGCACCCACCTGCCCTTCGCCGGGCCCCGCGAGCCGGGGAACCCGGA
GAGCTCTGCTCAGGAAGATCCCTCGCAGCCAGGAAAGGAAGCTCCCTGA

Translation (482 aa):
MDEGIPHLQERQLLEHRDFIGLDYSSLYMCKPKRSMKRDDTKDTYKLPHRLIEKKRRDRINECIAQLKDL
LPEHLKLTTLGHLEKAVVLELTLKHLKALTALTEQQHQKIIALQNGERSLKSPIQSDLDAFHSGFQTCAK
EVLQYLSRFESWTPREPRCVQLINHLHAVATQFLPTPQLLTQQVPLSKGTGAPSAAGSAAAPCLERAGQK
LEPLAYCVPVIQRTQPSAELAAENDTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGEDSPAPKRM
KLDSRGGGSGGGPGGGAAAAAAALLGPDPAAAAALLRPDAALLSSLVAFGGGGGAPFPQPAAAAAPFCLP
FCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLYPGIPAPAAAAAAAAAAAAAAAAFPCLSSVLS
PPPEKAGAAAATLLPHEVAPLGAPHPQHPHGRTHLPFAGPREPGNPESSAQEDPSQPGKEAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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