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Report for CCDS5944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5944.1 Public Homo sapiens 7 RNF32 24 110 108 CCDS HistoryNCBI Gene:140545Re-query CCDS DB by CCDS ID:5944.1Re-query CCDS DB by GeneID:140545See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317955.10 ENSP00000315950.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317955.10Link to Ensembl Protein Viewer:ENSP00000315950.5Re-query CCDS DB by Nucleotide ID:ENST00000317955Re-query CCDS DB by Protein ID:ENSP00000315950
Original member Current member EBI ENST00000392743.6 ENSP00000376499.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392743.6Link to Ensembl Protein Viewer:ENSP00000376499.2Re-query CCDS DB by Nucleotide ID:ENST00000392743Re-query CCDS DB by Protein ID:ENSP00000376499
Original member Current member EBI ENST00000405335.5 ENSP00000385285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405335.5Link to Ensembl Protein Viewer:ENSP00000385285.1Re-query CCDS DB by Nucleotide ID:ENST00000405335Re-query CCDS DB by Protein ID:ENSP00000385285
Original member Current member EBI ENST00000432459.6 ENSP00000405588.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432459.6Link to Ensembl Protein Viewer:ENSP00000405588.2Re-query CCDS DB by Nucleotide ID:ENST00000432459Re-query CCDS DB by Protein ID:ENSP00000405588
Original member Current member NCBI NM_001184996.2 NP_001171925.1 Accepted alive Link to Nucleotide Sequence:NM_001184996.2Link to Protein Sequence:NP_001171925.1Re-query CCDS DB by Nucleotide ID:NM_001184996Re-query CCDS DB by Protein ID:NP_001171925Link to BLAST:NP_001171925.1
Original member Current member NCBI NM_001184997.1 NP_001171926.1 Accepted alive Link to Nucleotide Sequence:NM_001184997.1Link to Protein Sequence:NP_001171926.1Re-query CCDS DB by Nucleotide ID:NM_001184997Re-query CCDS DB by Protein ID:NP_001171926Link to BLAST:NP_001171926.1
Original member Current member NCBI NM_030936.4 NP_112198.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030936.4Link to Protein Sequence:NP_112198.1Re-query CCDS DB by Nucleotide ID:NM_030936Re-query CCDS DB by Protein ID:NP_112198Link to BLAST:NP_112198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171925.1 362 Q9H0A6-1 362 100% 0 0
NP_001171926.1 362 Q9H0A6-1 362 100% 0 0
NP_112198.1 362 Q9H0A6-1 362 100% 0 0

Chromosomal Locations for CCDS 5944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 156643878 156643892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156644499 156644757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156654576 156654718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156657541 156657573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156658128 156658252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156658462 156658570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156675696 156675863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 156676419 156676655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGTTAAAAAATAAGGGTCACTCATCTAAGAAAGATAACTTGGCAGTCAATGCAGTTGCTTTACAAGATC
ACATTTTACATGATCTTCAACTTCGAAATCTTTCAGTTGCAGATCATTCTAAGACACAAGTACAAAAGAA
AGAGAACAAATCTCTAAAAAGAGATACAAAGGCAATAATAGATACTGGACTTAAAAAAACTACACAGTGC
CCCAAACTAGAAGACTCAGAAAAAGAATATGTTCTTGATCCCAAACCGCCGCCGTTGACTTTGGCACAGA
AGTTGGGCCTCATTGGGCCTCCACCACCTCCACTGTCATCAGATGAATGGGAGAAGGTGAAACAGCGCTC
TCTCCTGCAAGGGGACTCCGTGCAACCATGCCCCATCTGTAAAGAAGAATTCGAGCTTCGTCCTCAGGTG
CTGCTTTCATGCTCCCATGTGTTCCACAAAGCATGTCTTCAGGCTTTTGAAAAGTTCACAAATAAGAAAA
CCTGTCCTCTCTGTAGAAAGAACCAGTATCAAACCCGAGTGATACACGATGGGGCCCGCCTGTTCAGAAT
CAAGTGTGTGACCAGAATCCAAGCCTACTGGAGAGGATGTGTTGTTAGAAAGTGGTACAGAAACCTGAGG
AAAACAGTACCTCCCACAGATGCCAAGTTAAGAAAAAAATTCTTTGAAAAAAAGTTCACAGAAATCAGCC
ACCGCATCCTGTGCTCATACAACACCAACATTGAAGAGCTCTTTGCAGAAATCGATCAGTGCTTGGCCAT
AAATCGAAGTGTTCTTCAGCAGTTGGAAGAAAAATGTGGCCATGAGATCACAGAAGAGGAATGGGAGAAA
ATCCAAGTGCAGGCTCTGCGCCGGGAGACCCACGAGTGCTCCATCTGCCTGGCCCCTCTCTCCGCTGCTG
GCGGTCAGCGCGTGGGTGCAGGCAGGCGTTCCAGAGAGATGGCCCTCCTGTCCTGCTCACATGTGTTCCA
CCATGCGTGTCTGCTGGCACTAGAGGAGTTCTCCGTGGGAGACAGGCCTCCTTTCCATGCCTGTCCTCTC
TGCCGCTCCTGCTACCAGAAGAAGATTCTTGAATGTTGA

Translation (362 aa):
MLKNKGHSSKKDNLAVNAVALQDHILHDLQLRNLSVADHSKTQVQKKENKSLKRDTKAIIDTGLKKTTQC
PKLEDSEKEYVLDPKPPPLTLAQKLGLIGPPPPPLSSDEWEKVKQRSLLQGDSVQPCPICKEEFELRPQV
LLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHDGARLFRIKCVTRIQAYWRGCVVRKWYRNLR
KTVPPTDAKLRKKFFEKKFTEISHRILCSYNTNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEK
IQVQALRRETHECSICLAPLSAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPL
CRSCYQKKILEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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