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Report for CCDS65554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65554.1 Public Homo sapiens 1 TM2D1 24 110 108 CCDS HistoryNCBI Gene:83941Re-query CCDS DB by CCDS ID:65554.1Re-query CCDS DB by GeneID:83941See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65554.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000606498.5 ENSP00000475700.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000606498.5Link to Ensembl Protein Viewer:ENSP00000475700.1Re-query CCDS DB by Nucleotide ID:ENST00000606498Re-query CCDS DB by Protein ID:ENSP00000475700
Original member Current member NCBI NM_032027.3 NP_114416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032027.3Link to Protein Sequence:NP_114416.1Re-query CCDS DB by Nucleotide ID:NM_032027Re-query CCDS DB by Protein ID:NP_114416Link to BLAST:NP_114416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114416.1 207 Q9BX74 207 100% 0 0

Chromosomal Locations for CCDS 65554.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 61683436 61683546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61694697 61694770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61700934 61701025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61709329 61709437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61723713 61723786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 61724957 61725120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCGGCCGCCTGGCCGTCTGGTCCGTCTGCTCCGGAGGCCGTGACGGCCAGACTCGTTGGTGTCCTGT
GGTTCGTCTCAGTCACTACAGGACCCTGGGGGGCTGTTGCCACCTCCGCCGGGGGCGAGGAGTCGCTTAA
GTGCGAGGACCTCAAAGTGGGACAATATATTTGTAAAGATCCAAAAATAAATGACGCTACGCAAGAACCA
GTTAACTGTACAAACTACACAGCTCATGTTTCCTGTTTTCCAGCACCCAACATAACTTGTAAGGATTCCA
GTGGCAATGAAACACATTTTACTGGGAACGAAGTTGGTTTTTTCAAGCCCATATCTTGCCGAAATGTAAA
TGGCTATTCCTACAAAGTGGCAGTCGCATTGTCTCTTTTTCTTGGATGGTTGGGAGCAGATCGATTTTAC
CTTGGATACCCTGCTTTGGGTTTGTTAAAGTTTTGCACTGTAGGGTTTTGTGGAATTGGGAGCCTAATTG
ATTTCATTCTTATTTCAATGCAGATTGTTGGACCTTCAGATGGAAGTAGTTACATTATAGATTACTATGG
AACCAGACTTACAAGACTGAGTATTACTAATGAAACATTTAGAAAAACGCAATTATATCCATAA

Translation (207 aa):
MAAAWPSGPSAPEAVTARLVGVLWFVSVTTGPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEP
VNCTNYTAHVSCFPAPNITCKDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFY
LGYPALGLLKFCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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