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Report for CCDS5850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5850.1 Public Homo sapiens 7 ZC3HAV1L 24 110 108 CCDS HistoryNCBI Gene:92092Re-query CCDS DB by CCDS ID:5850.1Re-query CCDS DB by GeneID:92092See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5850.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275766.2 ENSP00000275766.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275766.2Link to Ensembl Protein Viewer:ENSP00000275766.1Re-query CCDS DB by Nucleotide ID:ENST00000275766Re-query CCDS DB by Protein ID:ENSP00000275766
Original member Current member NCBI NM_080660.4 NP_542391.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080660.4Link to Protein Sequence:NP_542391.2Re-query CCDS DB by Nucleotide ID:NM_080660Re-query CCDS DB by Protein ID:NP_542391Link to BLAST:NP_542391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542391.2 300 Q96H79-1 300 100% 0 0

Chromosomal Locations for CCDS 5850.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139026544 139026560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139026708 139026833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139028702 139028960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139034543 139034678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139035653 139036017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCGGAGCCCACAGTGTGCTCCTTCCTCACCAAGGTGCTGTGCGCCCACGGCGGCCGCATGTTCCTGA
AGGACCTGCGCGGCCACGTGGAGCTGTCGGAGGCCAGGCTCCGGGACGTGCTGCAGCGCGCCGGGCCCGA
GCGTTTCCTGCTGCAGGAGGTGGAGACGCAGGAGGGCCTCGGGGACGCGGAGGCCGAGGCGGCGGCCGGC
GCGGTGGGCGGTGGCGGCACCTCCGCCTGGAGGGTGGTGGCCGTGTCCTCTGTGCGCCTCTGCGCCCGCT
ACCAGCGCGGCGAGTGCCAGGCCTGCGACCAGCTGCACTTCTGCCGCCGGCACATGCTGGGCAAGTGCCC
CAACCGGGACTGCTGGTCTACCTGTACCCTTTCCCATGATATCCACACACCTGTCAACATGCAGGTCCTG
AAAAGCCATGGACTTTTTGGTCTCAATGAAAACCAGCTTCGGATCCTGCTTTTGCAGAATGACCCCTGTC
TTTTACCAGAGGTCTGTTTGCTCTACAACAAAGGGGAAGCCCTGTATGGCTACTGCAACCTCAAGGATAA
ATGCAACAAGTTTCATGTGTGCAAATCCTTTGTGAAAGGAGAATGCAAACTTCAGACCTGCAAACGGTCC
CATCAGCTTATCCATGCTGCATCTTTGAAGCTGCTACAGGACCAAGGACTGAATATTCCAAGTGTTGTTA
ATTTTCAGATAATCTCCACCTACAAGCATATGAAGCTGCACAAGATGCTTGAAAATACAGATAATTCATC
ACCTTCGACTGAGCATTCACAAGGCCTTGAGAAGCAAGGAGTGCACGCAGCTGGAGCTGCAGAAGCTGGT
CCTCTGGCTTCTGTCCCTGCTCAGTCGGCCAAGAAGCCCTGCCCAGTGTCTTGCGAGAAGTAA

Translation (300 aa):
MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGLGDAEAEAAAG
AVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRHMLGKCPNRDCWSTCTLSHDIHTPVNMQVL
KSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYGYCNLKDKCNKFHVCKSFVKGECKLQTCKRS
HQLIHAASLKLLQDQGLNIPSVVNFQIISTYKHMKLHKMLENTDNSSPSTEHSQGLEKQGVHAAGAAEAG
PLASVPAQSAKKPCPVSCEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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