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Report for CCDS39848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39848.1 Public Mus musculus 7 Blvrb 23 108 98 CCDS HistoryNCBI Gene:233016Re-query CCDS DB by CCDS ID:39848.1Re-query CCDS DB by GeneID:233016See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037399.15 ENSMUSP00000043092.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037399.15Link to Ensembl Protein Viewer:ENSMUSP00000043092.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000037399Re-query CCDS DB by Protein ID:ENSMUSP00000043092
Original member Current member NCBI NM_144923.3 NP_659172.1 Accepted alive Link to Nucleotide Sequence:NM_144923.3Link to Protein Sequence:NP_659172.1Re-query CCDS DB by Nucleotide ID:NM_144923Re-query CCDS DB by Protein ID:NP_659172Link to BLAST:NP_659172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659172.1 206 Q923D2 206 100% 0 0

Chromosomal Locations for CCDS 39848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27448118 27448196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27459256 27459420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27459563 27459652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27462567 27462695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27465720 27465877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGACTGTCAAGAAGATCGCGATCTTCGGTGCCACCGGCAGGACCGGGCTCACCACACTGGCGCAGGCGG
TGCAAGCAGGTTATGAGGTGACGGTGCTGGTTCGAGACTCCAGCAGGCTGCCGTCAGAAGGACCCCAGCC
AGCCCATGTGGTGGTGGGAGATGTTCGGCAGGCGGCCGATGTGGACAAGACTGTGGCTGGGCAGGAAGCT
GTCATCGTGCTACTGGGCACTGGCAACGACCTCAGTCCCACTACAGTAATGTCCGAGGGCACCCGGAACA
TCGTGACAGCCATGAAGGCACATGGAGTGGACAAGGTCGTGGCCTGCACCTCGGCCTTCCTACTATGGGA
CCCGACCAAGGTGCCCCCACGCCTGCAGGACGTGACCGATGACCACATCCGGATGCATAAGATTCTGCAA
GAGTCAGGGCTGAAATACGTGGCAGTGATGCCCCCACACATAGGAGACCAACCACTAACTGGGGCCTACA
CAGTGACCCTGGATGGACGAGGGCCCTCGAGGGTCATATCCAAGCATGACCTGGGCCACTTCATGCTACG
GTGCCTCACCACCAATGAGTATGACGGACACACCACCTACCCCTCCCACCAGTATGACTAG

Translation (206 aa):
MTVKKIAIFGATGRTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPQPAHVVVGDVRQAADVDKTVAGQEA
VIVLLGTGNDLSPTTVMSEGTRNIVTAMKAHGVDKVVACTSAFLLWDPTKVPPRLQDVTDDHIRMHKILQ
ESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTNEYDGHTTYPSHQYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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