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Report for CCDS7656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7656.1 Public Homo sapiens 10 CLRN3 24 110 108 CCDS HistoryNCBI Gene:119467Re-query CCDS DB by CCDS ID:7656.1Re-query CCDS DB by GeneID:119467See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7656.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368671.4 ENSP00000357660.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368671.4Link to Ensembl Protein Viewer:ENSP00000357660.3Re-query CCDS DB by Nucleotide ID:ENST00000368671Re-query CCDS DB by Protein ID:ENSP00000357660
Original member Current member NCBI NM_152311.5 NP_689524.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152311.5Link to Protein Sequence:NP_689524.1Re-query CCDS DB by Nucleotide ID:NM_152311Re-query CCDS DB by Protein ID:NP_689524Link to BLAST:NP_689524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689524.1 226 Q8NCR9-1 226 100% 0 0

Chromosomal Locations for CCDS 7656.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127878149 127878420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127883696 127883875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127892556 127892784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCCTACCACAAAGAAGACATTGATGTTCTTATCAAGCTTTTTCACCAGCCTTGGGTCCTTCATTGTAA
TTTGCTCTATTCTTGGGACACAAGCATGGATCACCAGTACAATTGCTGTTAGAGACTCTGCTTCAAATGG
GAGCATTTTCATCACTTACGGACTTTTTCGTGGGGAGAGTAGTGAAGAATTGAGTCACGGACTTGCAGAA
CCAAAGAAAAAGTTTGCAGTTTTAGAGATACTGAATAATTCTTCCCAAAAAACTCTGCATTCGGTGACTA
TCCTGTTCCTGGTCCTGAGTTTGATCACGTCGCTGCTGAGCTCTGGGTTTACCTTCTACAACAGCATCAG
CAACCCTTACCAGACATTCCTGGGGCCGACGGGGGTGTACACCTGGAACGGGCTCGGTGCATCCTTCGTT
TTTGTGACCATGATACTGTTTGTGGCGAACACGCAGTCCAACCAACTCTCCGAAGAGTTGTTCCAAATGC
TTTACCCGGCAACCACCAGTAAAGGAACGACCCACAGTTACGGATACTCGTTCTGGCTCATACTGCTCGT
CATTCTTCTAAATATAGTCACTGTAACCATCATCATTTTCTACCAGAAGGCCAGATACCAGCGGAAGCAG
GAGCAGAGAAAGCCAATGGAATATGCTCCAAGGGACGGAATTTTATTCTGA

Translation (226 aa):
MPTTKKTLMFLSSFFTSLGSFIVICSILGTQAWITSTIAVRDSASNGSIFITYGLFRGESSEELSHGLAE
PKKKFAVLEILNNSSQKTLHSVTILFLVLSLITSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFV
FVTMILFVANTQSNQLSEELFQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTIIIFYQKARYQRKQ
EQRKPMEYAPRDGILF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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