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Report for CCDS85.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85.1 Public Homo sapiens 1 PHF13 24 110 108 CCDS HistoryNCBI Gene:148479Re-query CCDS DB by CCDS ID:85.1Re-query CCDS DB by GeneID:148479See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377648.5 ENSP00000366876.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377648.5Link to Ensembl Protein Viewer:ENSP00000366876.4Re-query CCDS DB by Nucleotide ID:ENST00000377648Re-query CCDS DB by Protein ID:ENSP00000366876
Original member Current member NCBI NM_153812.3 NP_722519.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153812.3Link to Protein Sequence:NP_722519.2Re-query CCDS DB by Nucleotide ID:NM_153812Re-query CCDS DB by Protein ID:NP_722519Link to BLAST:NP_722519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722519.2 300 Q86YI8 300 100% 0 0

Chromosomal Locations for CCDS 85.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6614067 6614105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6616757 6616858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6619803 6620337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6621411 6621637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGACTCTGACTCTTGCGCCGCCGCCTTCCACCCGGAGGAATACTCCCCCAGTTGCAAGAGGCGCAGGA
CCGTGGAAGACTTCAACAAATTCTGCACCTTTGTCTTGGCCTATGCTGGCTACATCCCTTATCCGAAGGA
GGAACTCCCTTTAAGGAGCAGCCCCAGCCCTGCTAACAGCACTGCTGGTACCATTGACAGCGACGGCTGG
GACGCGGGTTTCTCAGACATCGCGTCCTCAGTGCCCTTGCCAGTCTCTGACCGCTGCTTTAGCCACCTGC
AGCCTACTCTCTTGCAGCGAGCCAAGCCCAGTAACTTCCTGCTGGACAGAAAGAAAACGGACAAGCTGAA
GAAGAAGAAGAAGAGGAAGCGCAGGGACAGTGATGCGCCTGGGAAAGAGGGGTACAGGGGGGGCTTGCTG
AAGCTGGAAGCCGCTGACCCCTACGTGGAGACCCCCACGAGTCCCACCTTGCAGGATATCCCCCAGGCTC
CCAGCGACCCCTGCTCGGGCTGGGACTCCGATACTCCCTCGAGTGGATCTTGTGCCACTGTGTCACCTGA
TCAGGTCAAAGAAATAAAAACTGAAGGCAAACGGACTATCGTCCGGCAGGGAAAGCAGGTGGTGTTCCGA
GATGAGGACAGCACTGGCAATGATGAGGACATCATGGTGGACTCAGATGACGATTCCTGGGACCTCGTGA
CCTGCTTCTGCATGAAGCCATTTGCCGGCCGCCCCATGATCGAGTGTAATGAGTGCCACACCTGGATTCA
CCTGTCCTGTGCGAAAATCCGGAAATCCAATGTTCCAGAAGTGTTTGTCTGCCAAAAGTGCCGGGACTCC
AAGTTTGACATCCGCCGTTCCAACCGCTCGCGGACGGGCTCCCGGAAGCTGTTCCTGGACTGA

Translation (300 aa):
MDSDSCAAAFHPEEYSPSCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANSTAGTIDSDGW
DAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKKTDKLKKKKKRKRRDSDAPGKEGYRGGLL
KLEAADPYVETPTSPTLQDIPQAPSDPCSGWDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFR
DEDSTGNDEDIMVDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS
KFDIRRSNRSRTGSRKLFLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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