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Report for CCDS6056.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6056.2 Public Homo sapiens 8 TRIM35 24 110 108 CCDS HistoryNCBI Gene:23087Re-query CCDS DB by CCDS ID:6056.2Re-query CCDS DB by GeneID:23087See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6056.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305364.9 ENSP00000301924.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305364.9Link to Ensembl Protein Viewer:ENSP00000301924.4Re-query CCDS DB by Nucleotide ID:ENST00000305364Re-query CCDS DB by Protein ID:ENSP00000301924
Original member Current member NCBI NM_171982.5 NP_741983.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_171982.5Link to Protein Sequence:NP_741983.2Re-query CCDS DB by Nucleotide ID:NM_171982Re-query CCDS DB by Protein ID:NP_741983Link to BLAST:NP_741983.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_741983.2 493 Q9UPQ4-1 493 100% 0 0

Chromosomal Locations for CCDS 6056.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27287550 27288127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27289162 27289280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27290156 27290178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27294080 27294310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27298464 27298559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27310801 27311235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGAGCGGAGTCCCGACGTGTCCCCCGGGCCTTCCCGCTCCTTCAAGGAGGAGTTGCTCTGCGCCGTCT
GCTACGACCCCTTCCGCGACGCAGTCACTCTGCGCTGCGGCCACAACTTCTGCCGCGGGTGCGTGAGCCG
CTGCTGGGAGGTGCAGGTGTCGCCCACCTGCCCAGTGTGCAAAGACCGCGCGTCACCCGCCGACCTGCGC
ACCAACCACACCCTCAACAACCTGGTGGAGAAGCTGCTGCGCGAGGAGGCCGAGGGCGCGCGCTGGACCA
GCTACCGCTTCTCGCGTGTCTGCCGCCTGCACCGCGGACAGCTCAGCCTCTTCTGCCTCGAGGACAAGGA
GCTGCTGTGCTGCTCCTGCCAGGCCGACCCCCGACACCAGGGGCACCGCGTGCAGCCGGTGAAGGACACT
GCCCACGACTTTCGGGCCAAGTGCAGGAACATGGAGCATGCACTGCGGGAGAAGGCCAAGGCCTTCTGGG
CCATGCGGCGCTCCTATGAGGCCATCGCCAAGCACAATCAGGTGGAGGCTGCATGGCTGGAAGGCCGGAT
CCGGCAGGAGTTTGATAAGCTTCGCGAGTTCTTGAGAGTGGAGGAGCAGGCCATTCTGGATGCCATGGCC
GAGGAGACAAGGCAGAAGCAACTTCTGGCCGACGAGAAGATGAAGCAGCTCACAGAGGAGACGGAGGTGC
TGGCACATGAGATCGAGCGGCTGCAGATGGAGATGAAGGAGGACGACGTTTCTTTTCTCATGAAACACAA
GAGCCGAAAACGCCGACTCTTCTGCACCATGGAGCCAGAGCCAGTCCAGCCCGGCATGCTTATCGATGTC
TGCAAGTACCTGGGCTCCCTGCAGTACCGCGTCTGGAAGAAGATGCTTGCATCTGTGGAATCTGTACCCT
TCAGCTTTGACCCCAACACCGCAGCTGGCTGGCTCTCCGTGTCTGACGACCTCACCAGCGTCACCAACCA
TGGCTACCGCGTGCAGGTGGAGAACCCGGAACGCTTCTCCTCGGCGCCCTGCCTGCTGGGCTCCCGTGTC
TTCTCACAGGGCTCGCACGCCTGGGAGGTGGCCCTTGGGGGGCTGCAGAGCTGGAGGGTGGGCGTGGTAC
GTGTGCGCCAGGACTCGGGCGCTGAGGGCCACTCACACAGCTGCTACCACGACACACGCTCGGGCTTCTG
GTATGTCTGCCGCACGCAGGGCGTGGAGGGGGACCACTGCGTGACCTCGGACCCAGCCACGTCGCCCCTG
GTCCTGGCCATCCCACGCCGCCTGCGTGTGGAGCTGGAGTGTGAGGAGGGCGAGCTGTCTTTCTATGACG
CGGAGCGCCACTGCCACCTGTACACCTTCCACGCCCGCTTTGGGGAGGTTCGCCCCTACTTCTACCTGGG
GGGTGCACGGGGCGCCGGGCCTCCAGAGCCTTTGCGCATCTGCCCCTTGCACATCAGTGTCAAGGAAGAA
CTGGATGGCTGA

Translation (493 aa):
MERSPDVSPGPSRSFKEELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLR
TNHTLNNLVEKLLREEAEGARWTSYRFSRVCRLHRGQLSLFCLEDKELLCCSCQADPRHQGHRVQPVKDT
AHDFRAKCRNMEHALREKAKAFWAMRRSYEAIAKHNQVEAAWLEGRIRQEFDKLREFLRVEEQAILDAMA
EETRQKQLLADEKMKQLTEETEVLAHEIERLQMEMKEDDVSFLMKHKSRKRRLFCTMEPEPVQPGMLIDV
CKYLGSLQYRVWKKMLASVESVPFSFDPNTAAGWLSVSDDLTSVTNHGYRVQVENPERFSSAPCLLGSRV
FSQGSHAWEVALGGLQSWRVGVVRVRQDSGAEGHSHSCYHDTRSGFWYVCRTQGVEGDHCVTSDPATSPL
VLAIPRRLRVELECEEGELSFYDAERHCHLYTFHARFGEVRPYFYLGGARGAGPPEPLRICPLHISVKEE
LDG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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