NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3483.1 Public Homo sapiens 4 ZAR1 24 110 108 CCDS HistoryNCBI Gene:326340Re-query CCDS DB by CCDS ID:3483.1Re-query CCDS DB by GeneID:326340See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327939.4 ENSP00000329803.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327939.4Link to Ensembl Protein Viewer:ENSP00000329803.4Re-query CCDS DB by Nucleotide ID:ENST00000327939Re-query CCDS DB by Protein ID:ENSP00000329803
Original member Current member NCBI NM_175619.3 NP_783318.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175619.3Link to Protein Sequence:NP_783318.1Re-query CCDS DB by Nucleotide ID:NM_175619Re-query CCDS DB by Protein ID:NP_783318Link to BLAST:NP_783318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783318.1 424 Q86SH2 424 100% 0 0

Chromosomal Locations for CCDS 3483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48490292 48491254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48492766 48492858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48492938 48493012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48494101 48494244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCGGCCCTGGGGGACGAGGTGCTGGACGGTTACGTGTTCCCGGCGTGCCCCCCCTGCTCGTACCGGT
ACCCATACCCCGCGGCCACCAAGGGCAAGGGCGCGGCGGGCGGCAGCTGGCAGCAGCGCGGCAGGGGCTG
CCTTCCCGCCTCCTCCCCCTGCTCGGCGGGCGCGGCCTCGTTGTCCTTCCCGGGCTGCGGGCGGCTGACG
GCCGCCGAGTACTTCGACAGCTACCAGCGGGAGCGGCTCATGGCTCTCCTGGCGCAGGTGGGGCCGGGTC
TCGGGCCGCGCGCCCGCAGGGCCGGCAGCTGCGACGTGGCGGTGCAGGTGAGCCCGCGCATCGACGCCGC
GGTACAGTGCTCGCTGGGGAGGCGCACGCTGCAGCGCCGGGCCCGCGACCCCGAGTCCCCGGCCGGCCCC
GGGGCCGAGGGCACCACGGGTGGCGGCTCTTTCTCCCAGCAGCCATCCCGTCGAGGCCTGGAGCAGGGCA
GCCCCCAGAACGGCGCCCCGCGGCCCATGCGCTTCCCGCGCACCGTCGCCGTGTACTCGCCCCTGGCCTT
GCGCCGTCTCACCGCCTTCCTGGAGGGGCCCGGGCCCGCGGCGGGCGAGCAGAGGTCCGGGGCGTCGGAC
GGAGAGAGGGGGCCGCCGCCCGCGCGGCTTCAAGGCCCAGAGGAGGGGGAGGTGTGGACGAAGAAGGCGC
CCCGGCGGCCGCAGTCCGACGACGACGGCGAGGCCCAGGCCGCAGTCCGAGCGAGCTGGGAGCAGCCGGC
CGACGGTCCCGAGCTGCCGCCGCGAGAGGCCCAGGAGGGCGAGGCGGCTCCGCGGTCGGCGCTAAGGAGC
CCGGGGCAACCTCCGTCGGCGGGGAGGGCCCGAGACGGCGGCGACGGACGGGAGGCGGCCGTCGCGGGAG
AGGGGCCGTCGCCACGGAGCCCGGAGCTGGGCAAGGAGCGGCTGCGCTTCCAGTTCTTAGAGCAGAAATA
TGGCTATTACCACTGCAAGGACTGCAACATCCGCTGGGAGAGTGCTTATGTGTGGTGTGTACAGGGAACT
AACAAGGTTTACTTCAAACAGTTTTGCAGAACTTGTCAGAAGTCTTATAACCCTTACCGAGTGGAGGATA
TCACCTGTCAAAGTTGTAAACAAACGAGATGTTCCTGCCCAGTAAAACTTCGCCACGTGGACCCTAAACG
GCCCCACCGTCAAGATTTGTGCGGTAGATGCAAAGGCAAACGCCTGTCCTGTGACAGCACTTTCAGCTTC
AAATACATCATTTAG

Translation (424 aa):
MAALGDEVLDGYVFPACPPCSYRYPYPAATKGKGAAGGSWQQRGRGCLPASSPCSAGAASLSFPGCGRLT
AAEYFDSYQRERLMALLAQVGPGLGPRARRAGSCDVAVQVSPRIDAAVQCSLGRRTLQRRARDPESPAGP
GAEGTTGGGSFSQQPSRRGLEQGSPQNGAPRPMRFPRTVAVYSPLALRRLTAFLEGPGPAAGEQRSGASD
GERGPPPARLQGPEEGEVWTKKAPRRPQSDDDGEAQAAVRASWEQPADGPELPPREAQEGEAAPRSALRS
PGQPPSAGRARDGGDGREAAVAGEGPSPRSPELGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGT
NKVYFKQFCRTCQKSYNPYRVEDITCQSCKQTRCSCPVKLRHVDPKRPHRQDLCGRCKGKRLSCDSTFSF
KYII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH