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Report for CCDS8060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8060.1 Public Homo sapiens 11 FERMT3 24 110 108 CCDS HistoryNCBI Gene:83706Re-query CCDS DB by CCDS ID:8060.1Re-query CCDS DB by GeneID:83706See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279227.10 ENSP00000279227.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000279227.10Link to Ensembl Protein Viewer:ENSP00000279227.5Re-query CCDS DB by Nucleotide ID:ENST00000279227Re-query CCDS DB by Protein ID:ENSP00000279227
Original member Current member EBI ENST00000698860.1 ENSP00000513988.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698860.1Link to Ensembl Protein Viewer:ENSP00000513988.1Re-query CCDS DB by Nucleotide ID:ENST00000698860Re-query CCDS DB by Protein ID:ENSP00000513988
Original member Current member NCBI NM_001382362.1 NP_001369291.1 Accepted alive Link to Nucleotide Sequence:NM_001382362.1Link to Protein Sequence:NP_001369291.1Re-query CCDS DB by Nucleotide ID:NM_001382362Re-query CCDS DB by Protein ID:NP_001369291Link to BLAST:NP_001369291.1
Original member Current member NCBI NM_178443.3 NP_848537.1 Accepted alive Link to Nucleotide Sequence:NM_178443.3Link to Protein Sequence:NP_848537.1Re-query CCDS DB by Nucleotide ID:NM_178443Re-query CCDS DB by Protein ID:NP_848537Link to BLAST:NP_848537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369291.1 667 Q86UX7-1 667 100% 0 0
NP_848537.1 667 Q86UX7-1 667 100% 0 0

Chromosomal Locations for CCDS 8060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64207365 64207524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64210611 64210844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64211052 64211171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64211275 64211443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64211645 64211747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64219251 64219358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64219524 64219658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64219740 64219789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64219879 64220015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64220220 64220326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64220436 64220669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64221016 64221140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64223048 64223189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64223313 64223492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGCGGGGATGAAGACAGCCTCCGGGGACTACATCGACTCGTCATGGGAGCTGCGGGTGTTTGTGGGAG
AGGAGGACCCAGAGGCCGAGTCGGTCACCCTGCGGGTCACTGGGGAGTCGCACATCGGCGGGGTGCTCCT
GAAGATTGTGGAGCAGATCAATCGCAAGCAGGACTGGTCAGACCATGCTATTTGGTGGGAACAGAAGAGG
CAGTGGCTGCTGCAGACCCACTGGACACTGGACAAGTACGGGATCCTGGCCGACGCACGCCTCTTCTTTG
GGCCCCAGCACCGGCCCGTCATCCTTCGGTTGCCCAACCGCCGCGCACTGCGCCTCCGTGCCAGCTTCTC
CCAGCCCCTCTTCCAGGCTGTGGCTGCCATCTGCCGCCTCCTCAGCATCCGGCACCCCGAGGAGCTGTCC
CTGCTCCGGGCTCCTGAGAAGAAGGAGAAGAAGAAGAAAGAGAAGGAGCCAGAGGAAGAGCTCTATGACT
TGAGCAAGGTTGTCTTGGCTGGGGGCGTGGCACCTGCACTGTTCCGGGGGATGCCAGCTCACTTCTCGGA
CAGCGCCCAGACTGAGGCCTGCTACCACATGCTGAGCCGGCCCCAGCCGCCACCCGACCCCCTCCTGCTC
CAGCGTCTGCCACGGCCCAGCTCCCTGTCAGACAAGACCCAGCTCCACAGCAGGTGGCTGGACTCGTCGC
GGTGTCTCATGCAGCAGGGCATCAAGGCCGGGGACGCACTCTGGCTGCGCTTCAAGTACTACAGCTTCTT
CGATTTGGATCCCAAGACAGACCCCGTGCGGCTGACACAGCTGTATGAGCAGGCCCGGTGGGACCTGCTG
CTGGAGGAGATTGACTGCACCGAGGAGGAGATGATGGTGTTTGCCGCCCTGCAGTACCACATCAACAAGC
TGTCCCAGAGCGGGGAGGTGGGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGACCTGGATGTGGCCCT
GAGCAACCTGGAGGTGAAGCTGGAGGGGTCGGCGCCCACAGATGTGCTGGACAGCCTCACCACCATCCCA
GAGCTCAAGGACCATCTCCGAATCTTTCGCATCCCACGAAGGCCCCGGAAGCTGACCCTGAAGGGCTACC
GCCAACACTGGGTGGTGTTCAAGGAGACCACACTGTCCTACTACAAGAGCCAGGACGAGGCCCCTGGGGA
CCCCATTCAGCAGCTCAACCTCAAGGGCTGTGAGGTGGTTCCCGATGTTAACGTCTCCGGCCAGAAGTTC
TGCATTAAACTCCTAGTGCCCTCCCCTGAGGGCATGAGTGAGATCTACCTGCGGTGCCAGGATGAGCAGC
AGTATGCCCGCTGGATGGCTGGCTGCCGCCTGGCCTCCAAAGGCCGCACCATGGCCGACAGCAGCTACAC
CAGCGAGGTGCAGGCCATCCTGGCCTTCCTCAGCCTGCAGCGCACGGGCAGTGGGGGCCCGGGCAACCAC
CCCCACGGCCCTGATGCCTCTGCCGAGGGCCTCAACCCCTACGGCCTCGTTGCCCCCCGTTTCCAGCGAA
AGTTCAAGGCCAAGCAGCTCACCCCACGGATCCTGGAAGCCCACCAGAATGTGGCCCAGTTGTCGCTGGC
AGAGGCCCAGCTGCGCTTCATCCAGGCCTGGCAGTCCCTGCCCGACTTCGGCATCTCCTATGTCATGGTC
AGGTTCAAGGGCAGCAGGAAAGACGAGATCCTGGGCATCGCCAACAACCGACTGATCCGCATCGACTTGG
CCGTGGGCGACGTGGTCAAGACCTGGCGTTTCAGCAACATGCGCCAGTGGAATGTCAACTGGGACATCCG
GCAGGTGGCCATCGAGTTTGATGAACACATCAATGTGGCCTTCAGCTGCGTGTCTGCCAGCTGCCGAATT
GTACACGAGTATATCGGGGGCTACATTTTCCTGTCGACGCGGGAGCGGGCCCGTGGGGAGGAGCTGGATG
AAGACCTCTTCCTGCAGCTCACCGGGGGCCATGAGGCCTTCTGA

Translation (667 aa):
MAGMKTASGDYIDSSWELRVFVGEEDPEAESVTLRVTGESHIGGVLLKIVEQINRKQDWSDHAIWWEQKR
QWLLQTHWTLDKYGILADARLFFGPQHRPVILRLPNRRALRLRASFSQPLFQAVAAICRLLSIRHPEELS
LLRAPEKKEKKKKEKEPEEELYDLSKVVLAGGVAPALFRGMPAHFSDSAQTEACYHMLSRPQPPPDPLLL
QRLPRPSSLSDKTQLHSRWLDSSRCLMQQGIKAGDALWLRFKYYSFFDLDPKTDPVRLTQLYEQARWDLL
LEEIDCTEEEMMVFAALQYHINKLSQSGEVGEPAGTDPGLDDLDVALSNLEVKLEGSAPTDVLDSLTTIP
ELKDHLRIFRIPRRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKF
CIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTSEVQAILAFLSLQRTGSGGPGNH
PHGPDASAEGLNPYGLVAPRFQRKFKAKQLTPRILEAHQNVAQLSLAEAQLRFIQAWQSLPDFGISYVMV
RFKGSRKDEILGIANNRLIRIDLAVGDVVKTWRFSNMRQWNVNWDIRQVAIEFDEHINVAFSCVSASCRI
VHEYIGGYIFLSTRERARGEELDEDLFLQLTGGHEAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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