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Report for CCDS13251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13251.1 Public Homo sapiens 20 FAM83C 24 110 108 CCDS HistoryNCBI Gene:128876Re-query CCDS DB by CCDS ID:13251.1Re-query CCDS DB by GeneID:128876See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374408.4 ENSP00000363529.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374408.4Link to Ensembl Protein Viewer:ENSP00000363529.3Re-query CCDS DB by Nucleotide ID:ENST00000374408Re-query CCDS DB by Protein ID:ENSP00000363529
Original member Current member NCBI NM_178468.6 NP_848563.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178468.6Link to Protein Sequence:NP_848563.1Re-query CCDS DB by Nucleotide ID:NM_178468Re-query CCDS DB by Protein ID:NP_848563Link to BLAST:NP_848563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848563.1 747 Q9BQN1 747 100% 0 0

Chromosomal Locations for CCDS 13251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35286535 35287972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35288461 35288585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35288791 35288958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35291792 35292304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGTTCGGAGGCCCGGGGCCTGGGGTCCTGGGAGCCCAGGGCATGGCGGGACCCCTGCGGGGCCGGGTGG
AA
GAGCTGAAGCTGCCGTGGTGGCGGGAGAGCTCACCGCTGGTGCTGCGGCACAGCGAGGCGGCTCGGCT
G
GCGGCCGACGCCCTCCTGGAGCGGGGTGAGGCTGCCTACCTGCGGGTCATCTCCGAGGAGCGGGAGCTG
CCC
TTCCTGAGCGCCCTGGATGTGGACTACATGACCAGCCATGTGCGCGGGGGCCCTGAGCTCAGCGAGG
CT
CAGGGGCAGGAGGCCTCCGGGCCAGACCGCCTCAGCCTGCTCTCTGAAGTCACCTCAGGGACTTACTT
C
CCCATGGCCTCTGACATAGACCCCCCAGACCTGGACCTGGGCTGGCCCGAGGTGCCACAGGCCACAGGC
TTC
AGCCCCACCCAGGCTGTGGTCCACTTCCAGAGGGACAAGGCCAAGAACATCAAGGACCTGCTGCGCT
TC
CTTTTCAGCCAGGCCCACACGGTGGTGGCTGTGGTGATGGACATATTCACTGACATGGAGCTTCTGTG
T
GACCTCATGGAGGCCTCAAGCCGGCGTGGTGTCCCTGTGTACCTGCTCCTTGCCCAGGAGCACCTGAGG
CAC
TTCCTGGAGATGTGCTACAAGATGGACCTCAATGGGGAGCACCTGCCGAACATGCGTGTGCGGAGCA
CG
TGTGGGGACACATACTGCAGCAAGGCTGGCCGCCGCTTCACGGGGCAGGCCCTGGAGAAGTTCGTCCT
C
ATTGACTGTGAGCAAGTGGTGGCGGGCAGTTACAGCTTCACCTGGCTTTGCAGCCAGGCCCACACTAGC
ATG
GTGCTGCAGCTGAGGGGCCGCATCGTGGAAGACTTTGACCGGGAGTTCCGCTGTCTGTACGCTGAGT
CG
CAGCCTGTGGAGGGCTTCTGTGGCGGTGAGGACCCGCTGTCTCCCCGGGCACTGCGTCCTCCCCCTGT
G
GCCCTAGCCTTCAGGCCTGATGTCCCAAGCCCCACGTCGTCCCTGCCCTCCAGCACCAGCCTCAGCAGC
ATC
AAGCAGTCACCGCTTATGGGTCGCTCCTCCTACCTCGCTCTACCAGGAGGTGGTGATTGCAGTGATA
CG
GGTGTGGTGTCCTCGTCCCTGGGTCCTGCCCGCCGTGAGGCCAGTGGCCAGCCCTCCCTACATCGCCA
A
CTGTCAGACCCTAACCACGGCTCCCCTCCTGGGCTCTATAGGGCCAATCTCGGCAAGCTAGGGGCATAC
CCA
TGGTCCCAGTCCTCCCCTGCCCTCAACCATAATAGTACCAGCCCCTTAACCTTGGCAGTGGGGTCAC
CT
CTGCTTCCTCGCTCCCGGCCCCTCCTCCAGTTCCATCGGGGTGCCCCAGCTCTGTCCCGGTTCCCAGA
G
AATGGGCTCCCAGGAAGCCAAGAGCCCAGCCCCCTGCGGGGTCGATGGGTACCTGGCACAACCCTGGAG
ACA
GTGGAGGAGAAGGAGAAGAAGGCATCTCCAAGTCAGAGCCGTGGCCAGCTGGATCTCCTTGTCCCCT
TC
CCCAGAGCCCGAGAAGTGGGAGACCCTGACTCTGGGGTTACCCCCAACTCAGGCCCCCTTCGGCCTGG
C
GAGCAGGCCCCAGAGGACAGGAGGTTGTCCCCAAGCCAGGCCGACAGCCAGCTGGATCTCCTGTCCCGA
GCC
CTGGGTACTGGGGGTGCCCCTGAGTTGGGTTCCCTCAGACCTGGTGATCGGGCCCTGGAGGACAGGA
GG
CTGTCCCTAAACCAAAGCCGTGGCCAATCAGACCTCCTGATGCAGTACCCCAAGGCCCAGGGTTCCAG
A
GTGCCCCTTGAAACCAACTCCTCAGCCAGACCTGCCAGACGGGCACCAGATGAGCGGCGGCAGACCCTG
GGG
CACAGCCAGCTGGACCTCATCACAAAGTTCGGCCCATTCCGTGGTGAGGGGCCTGGGCCCAATGGTC
TC
CCGATATCAAGCCCTGCTCGCACGGCTGGAGCTGGGTCTGGGGATGAGAAACGGCTAACCCTGGGCCA
C
AGCAAGCTGGACCTCATCACCAAGTATCATCAGTTGCACGGGGCCAGGCAGGGAACTGAGCCTGGGGGT
CCC
AAGGGTGGCCATCTCAATGGTGGTAACAGTGACCTGGTCAGGGATGAGAAACGGCTGACCCTGGGTC
AC
AGCAAACTGGACCTCATCACTAAGTACAACAAGTCCAAGTTCAAGCAGCTCCGAAGCCGCTTTGAGTC
C
TAG


Translation (747 aa):
MFGGPGPGVLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEEREL
P
FLSALDVDYMTSHVRGGPELSEAQGQEASGPDRLSLLSEVTSGTYFPMASDIDPPDLDLGWPEVPQATG
F
SPTQAVVHFQRDKAKNIKDLLRFLFSQAHT
VVAVVMDIFTDMELLCDLMEASSRRGVPVYLLLAQEHLR
H
FLEMCYKMDLNGEHLP
NMRVRSTCGDTYCSKAGRRFTGQALEKFVLIDCEQVVAGSYSFTWLCSQAHTS
M
VLQLRGRIVEDFDREFRCLYAESQPVEGFCGGEDPLSPRALRPPPVALAFRPDVPSPTSSLPSSTSLSS
I
KQSPLMGRSSYLALPGGGDCSDTGVVSSSLGPARREASGQPSLHRQLSDPNHGSPPGLYRANLGKLGAY
P
WSQSSPALNHNSTSPLTLAVGSPLLPRSRPLLQFHRGAPALSRFPENGLPGSQEPSPLRGRWVPGTTLE
T
VEEKEKKASPSQSRGQLDLLVPFPRAREVGDPDSGVTPNSGPLRPGEQAPEDRRLSPSQADSQLDLLSR
A
LGTGGAPELGSLRPGDRALEDRRLSLNQSRGQSDLLMQYPKAQGSRVPLETNSSARPARRAPDERRQTL
G
HSQLDLITKFGPFRGEGPGPNGLPISSPARTAGAGSGDEKRLTLGHSKLDLITKYHQLHGARQGTEPGG
P
KGGHLNGGNSDLVRDEKRLTLGHSKLDLITKYNKSKFKQLRSRFES




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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