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Report for CCDS54266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54266.1 Public Homo sapiens 19 SELENOV 24 110 108 CCDS HistoryNCBI Gene:348303Re-query CCDS DB by CCDS ID:54266.1Re-query CCDS DB by GeneID:348303See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 54266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335426.9 ENSP00000333956.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335426.9Link to Ensembl Protein Viewer:ENSP00000333956.4Re-query CCDS DB by Nucleotide ID:ENST00000335426Re-query CCDS DB by Protein ID:ENSP00000333956
Original member Current member NCBI NM_182704.2 NP_874363.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182704.2Link to Protein Sequence:NP_874363.1Re-query CCDS DB by Nucleotide ID:NM_182704Re-query CCDS DB by Protein ID:NP_874363Link to BLAST:NP_874363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874363.1 346 P59797 346 100% 0 0

Chromosomal Locations for CCDS 54266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39515213 39516021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39518608 39518632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39518740 39518793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39518903 39518977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39519071 39519148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 273

Nucleotide Sequence (1041 nt):
ATGAATAACCAGGCGCGGACCCCAGCCCCCTCCTCGGCGCGGACTTCAACCTCAGTCCGGGCTTCTACCC
CGACCCGGACACCGACTCCACTCCGGACCCCGACTCCGGTCCGGACTCGGACCCCCATCCGGACCCTGAC
TCCAGTCCTGACTCCGTCTCCAGCCGGGACTTCCCCTCTGGTCCTGACTCCTGCTCCAGCCCAGATTCCC
ACTCTGGTCCCCACTCCCGCTCTGGCCCGGATCCCCCGTCTGGTTCCGCCTCCTGCTCCGGCCTGGATCC
CTACTCCGGTGCCGACTCCCGTTCCCGTCCGGAACCCAACTCCGGTCCCGACTCCGGCTCGGACCCTGAC
TCCTCCAGTCCGGGTCCCAGCCCCAGCCCCAGCCCAGCTCCTGGCAGGGATTCGGGCCGCGCTCCCCGTC
TTGGACTCCTACCTGGCCCCGGCCCTACCTTTGGATCCGCCCCCGGAACCTGCTCCGGAGCTGCCTTTGT
TGCCCGAGGAGGACCCTGAGCCGGCGCCGAGCCTGAAGCTCATCCCGTCGGTCTCCAGCGAGGCCGGGCC
CGCCCCGGGGCCCCTTCCCACGCGCACCCCGCTGGCCGCGAACTCACCCGGGCCCACCCTGGACTTCACC
TTCAGGGCAGACCCGTCGGCCATCGGGCTGGCGGATCCCCCCATTCCCAGTCCTGTCCCCTCGCCCATCC
TGGGGACCATCCCGTCGGCCATCTCCTTACAGAATTGTACGGAAACCTTCCCCTCCTCCAGCGAGAACTT
CGCGCTGGACAAGAGGGTCCTGATTCGAGTGACCTACTGTGGCCTCTGAAGCTATAGCCTTCGGTACATT
CTACTGAAAAAGAGCCTGGAGCAGCAATTTCCGAATCACCTACTCTTTGAGGAGGACAGAGCTGCCCAGG
CTACAGGGGAGTTTGAGGTGTTTGTGAACGGGAGACTGGTCCATTCCAAGAAGAGGGGTGATGGCTTTGT
GAACGAGTCCAGGCTGCAGAAAATTGTGAGCGTTATCGATGAGGAAATCAAGAAAAGGTAG

Translation (346 aa):
MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIP
TLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPV
LDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRTPLAANSPGPTLDFT
FRADPSAIGLADPPIPSPVPSPILGTIPSAISLQNCTETFPSSSENFALDKRVLIRVTYCGLUSYSLRYI
LLKKSLEQQFPNHLLFEEDRAAQATGEFEVFVNGRLVHSKKRGDGFVNESRLQKIVSVIDEEIKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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