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Report for CCDS41824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41824.1 Public Homo sapiens 12 NT5DC3 24 110 108 CCDS HistoryNCBI Gene:51559Re-query CCDS DB by CCDS ID:41824.1Re-query CCDS DB by GeneID:51559See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392876.8 ENSP00000376615.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392876.8Link to Ensembl Protein Viewer:ENSP00000376615.3Re-query CCDS DB by Nucleotide ID:ENST00000392876Re-query CCDS DB by Protein ID:ENSP00000376615
Original member Current member NCBI NM_001031701.3 NP_001026871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031701.3Link to Protein Sequence:NP_001026871.1Re-query CCDS DB by Nucleotide ID:NM_001031701Re-query CCDS DB by Protein ID:NP_001026871Link to BLAST:NP_001026871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026871.1 548 Q86UY8-1 548 100% 0 0

Chromosomal Locations for CCDS 41824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103777829 103778081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103780300 103780364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103785335 103785475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103787441 103787527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103788838 103788919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103793164 103793265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103793410 103793512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103793937 103793997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103796894 103797031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103798587 103798677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103806322 103806377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103806855 103806929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103814937 103815121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103840949 103841156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGACCATGGCAGCGGCGGCGGTGGTGGCACGCGGGGCCGGGGCGAGGGCAGCGACAGCGGCGGCTTTGC
GGGGTGGCTGCGGGACCGCGGCTCGGGGGCGGCCGTGTGCGGGCCCCGCCCGGCCCTTGTGCACTGCACC
CGGGACCGCCCCGGACATGAAGCGCTACCTGTGGGAGCGCTACCGGGAGGCGAAGAGAAGCACAGAAGAA
TTGGTTCCTTCCATTATGAGCAACTTGTTGAATCCAGATGCCATTTTCTCAAACAATGAAATGAGCCTGT
CAGACATTGAAATCTATGGCTTCGATTATGATTACACCTTGGTGTTTTATTCAAAGCACCTCCACACGCT
GATATTTAATGCTGCACGGGACCTTCTCATCAATGAACACCGGTATCCAGCAGAAATCAGGAAGTATGAG
TATGACCCAAATTTTGCAATTCGTGGACTTCATTATGATGTACAGCGGGCAGTATTAATGAAGATCGATG
CTTTTCATTATATCCAGCTGGGAACTGTCTACAGAGGCCTCAGTGTTGTCCCTGATGAAGAAGTCATTGA
AATGTACGAGGGGTCCCACGTGCCCTTGGAGCAGATGAGTGACTTTTACGGAAAGAGCTCTCATGGAAAC
ACGATGAAGCAGTTCATGGACATCTTCTCCCTGCCCGAGATGACCCTCCTGTCCTGCGTGAATGAATACT
TCCTCAAGAACAACATCGACTATGAGCCTGTGCATCTGTACAAAGATGTCAAGGATTCAATTCGAGACGT
CCACATCAAAGGAATAATGTACAGAGCAATTGAAGCAGACATTGAAAAGTACATCTGCTATGCTGAGCAG
ACCCGCGCAGTGTTGGCCAAACTGGCTGATCATGGCAAGAAGATGTTTCTCATCACCAATAGCCCCAGTA
GCTTTGTGGACAAAGGGATGAGTTATATCGTTGGGAAAGACTGGAGGGACCTGTTCGATGTGGTCATTGT
TCAGGCTGAGAAGCCAAACTTCTTTAATGATAAGCGGAGGCCTTTCCGAAAGATGAATGAGAAAGGTGTC
TTACTCTGGGATAAAATCCATAAGTTGCAGAAAGGCCAGATATACAAGCAGGGTAATTTATATGAATTTT
TGAAGCTTACTGGATGGAGAGGATCCAGAGTGTTGTATTTTGGTGACCATATATACAGTGACCTGGCGGA
TTTGACCCTAAAGCATGGCTGGAGGACTGGTGCAATCATCCCAGAGTTGAGATCTGAGCTCAAAATCATG
AACACGGAGCAATACATTCAAACCATGACCTGGCTGCAGACCTTGACTGGCTTATTGGAACAGATGCAGG
TTCACAGAGATGCTGAGTCACAGCTGGTTTTGCAGGAGTGGAAAAAGGAAAGGAAGGAGATGCGAGAAAT
GACCAAGAGTTTCTTCAATGCCCAGTTTGGAAGCCTGTTCCGCACAGACCAGAACCCAACCTACTTCCTA
AGGCGCCTGTCGCGCTTCGCTGACATCTACATGGCGTCTCTGAGCTGCCTCCTGAACTATGACGTCAGCC
ACACTTTCTACCCCCGGAGGACTCCACTGCAGCACGAACTGCCCGCCTGGTCAGAAAGGCCCCCCACCTT
CGGAACCCCTCTCCTGCAGGAGGCCCAGGCCAAGTAG

Translation (548 aa):
MTMAAAAVVARGAGARAATAAALRGGCGTAARGRPCAGPARPLCTAPGTAPDMKRYLWERYREAKRSTEE
LVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPAEIRKYE
YDPNFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGN
TMKQFMDIFSLPEMTLLSCVNEYFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQ
TRAVLAKLADHGKKMFLITNSPSSFVDKGMSYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKMNEKGV
LLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSRVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIM
NTEQYIQTMTWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFL
RRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSERPPTFGTPLLQEAQAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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