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Report for CCDS43423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43423.1 Public Homo sapiens 6 SYCP2L 24 110 108 CCDS HistoryNCBI Gene:221711Re-query CCDS DB by CCDS ID:43423.1Re-query CCDS DB by GeneID:221711See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283141.11 ENSP00000283141.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283141.11Link to Ensembl Protein Viewer:ENSP00000283141.6Re-query CCDS DB by Nucleotide ID:ENST00000283141Re-query CCDS DB by Protein ID:ENSP00000283141
Original member Current member NCBI NM_001040274.3 NP_001035364.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040274.3Link to Protein Sequence:NP_001035364.2Re-query CCDS DB by Nucleotide ID:NM_001040274Re-query CCDS DB by Protein ID:NP_001035364Link to BLAST:NP_001035364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035364.2 812 Q5T4T6-1 812 100% 0 0

Chromosomal Locations for CCDS 43423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 10887127 10887135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10891513 10891581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10893867 10894004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10894085 10894204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10898011 10898115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10898824 10898848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10902677 10902762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10902875 10902963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10906020 10906054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10907542 10907684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10910148 10910200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10910824 10910869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10912673 10912765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10912867 10912927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10924496 10924641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10926339 10926432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10927240 10927367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10928403 10928450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10930370 10930514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10931440 10931489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10935058 10935187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10942459 10942529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10942677 10942746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10955116 10955217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10956136 10956242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10958784 10958875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10961305 10961404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10961500 10961558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 10963782 10963806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGCAAGCGAAAAACAAAGATGCTTTGCAGCCTATTAAGGAAGACAGGACTGGGAAGGCCCAGGATGATG
CTTTCTGGCTTCAATCACTTATTACGGATGCATTCCATGATAAAGGATTTCAGAAAATAAAAGAATACTT
TCAACAGAAAGAGAGCCACTTTCCTCAAAAATATAATCGTCTTCTATTATACCGTCTTGACAGATCAATA
AATAAGGAACTAGATAAAAATGAATTTCAGTCTGTGTCACTGTTGCTGAAATGTATTCAGCGATTCCTCG
TAGATGGCCTGAAAGAAGATGAACCTCTGCTAATTCGGCAGGGACTGATCCCAAAGCTAGTTTCCTGGTT
TGAAAGAACAACAGGAATTCTGACCTCGGAAGGCCTAGCCTCAGACACGTCGCTGATTTGTGTTATAGAA
GATTTCTTTGACACTGCATTGATTATTTCCAGGAGTAGTAGTGAAGGGAAAATTCAGATGTTGGATTCCT
TCCTACTTAGCTTAGGATTCCTGGTGACAGAAAAGACTGTAAATCATTTGCTTCAACAGGAGGGCTTGAA
GACTTTTAACTGCATTTTGCACGCTGTCCCTCGAGAAGAGAGAAAAAAATTCCCTTTGTCAGAAGGCATG
TGTCATCTTATGAAAGACCTTGCAAGGACACTCTTGACTGTGGGTGATTATGACCAGCAGGTTGCTATTT
CTGAAGCGCTGTGTAGACTGACGATTAAAAAATCAAGGGATGAACTTGTCCATAAATGGTTTGATGATGA
AGTCATTGCTGAAGCTTTCAAAGAAATTAAGGATCGAGAATTTGAGACGGACAGTAGACGTTTTCTCAAT
CACCTAAACAACAGACTTGGTGACCAAAGAAGGGTGTATTCATTTCCGTGTATTGCTGCTTTTGCTGATG
AGCATGAGATGAGAAAACCAGCGGATGAAAAATTAGAGAAATTTTGGATCGACTTCAACCTAGGAAGTCA
GAGTGTCACTTTTTATATAGACAATGCTGAGAATACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCG
GTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGA
TTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCATTTTGATTTGCAGTTCAACATATCACAAGTTTC
CATTCAAGCTTTAGGAGAAGACAAACAGATGTTGCCTGACCAGACGAAAATCTCCTCAGAACTTTTTAGT
AAGTCTGATAAAGAAGACAGGGAGAGTCCCAGTGGCCTTGAAAGAGAAACAGAGCAGGCAGAAGAATCCA
CTAACATGGTGGAGTTTATGAGTGCTGAAGATGACCGCTGCCTAATAACTCTCCACTTAAATGACCAATC
TGAGCCACCTGTTATTGGGGAACCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCT
GACTTCCCGCAACAACCTAAGTCTCATTACAGAAAACATCTCTTCTCTGAGAGTAATCAAGATTCAAGTA
CCAGTGAACTATCTTGGACCAGTAACCAGAAAAAGAAATCCCTAAAATCATATTCCAGTAGAAAGAAGAC
AAGAACCAGAAGTAATTTGAGAATCTTGCCAGTTTTCCCTCCCAGTAGTGGCAGTGGCCATGAGAAAGAC
CAAGCTAAGCTTCTATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGACTT
CTGAACAAAAATTCCAAGATAGTTTTGCTTTTTTGACTGCTGAAGATTCTGCCCAGAAAACAGAGCTTCA
AGATCCTCACTCACTGAGTGAGCTCTCTTCCTTGAAGCACTCAGAAGATGAAGAAAAACCTAAGATTGTG
AACCAAGAATCACTAACAGAAAGTACTAGCTTGAAACATAAGCTGAGAAACTTGGAAGACAAAGACATAC
CAGAAGGTAGTTTTGCTAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
AATAACAGAAGAAAGAGAGTTGCCAGAAGGAATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTG
AACGGTTCTGCCATTCTCCCAACCTTTGAAAACTTCACTAAAAAACGGAAAAGAAAATATGAGCTTAGGT
ACAGAAAGCGTCCGTTTAATTCAGAAAATGCAAAGAAAGCACCGGATTGCCTAATAAAACTTTTAAACCA
GATGCAACTGTTCAGACTCAATAAACTAGAGCGCTTTCAAAATTTGGTTCTTCAAGAGTTGAGCAGTCTT
AAGCAGGATATTCAGGCCCTGGAACACCTTGAGAAGGAGGTTCTGGAATTCTGGGGGAAACAGTCTGCTG
ATCTGCAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAATTCAACTCAGACTTCATAA

Translation (812 aa):
MQAKNKDALQPIKEDRTGKAQDDAFWLQSLITDAFHDKGFQKIKEYFQQKESHFPQKYNRLLLYRLDRSI
NKELDKNEFQSVSLLLKCIQRFLVDGLKEDEPLLIRQGLIPKLVSWFERTTGILTSEGLASDTSLICVIE
DFFDTALIISRSSSEGKIQMLDSFLLSLGFLVTEKTVNHLLQQEGLKTFNCILHAVPREERKKFPLSEGM
CHLMKDLARTLLTVGDYDQQVAISEALCRLTIKKSRDELVHKWFDDEVIAEAFKEIKDREFETDSRRFLN
HLNNRLGDQRRVYSFPCIAAFADEHEMRKPADEKLEKFWIDFNLGSQSVTFYIDNAENTLWDSVTLPKEA
VMNFSITETEKIKIFIIYLKKPMIISYKEVMKIEIHFDLQFNISQVSIQALGEDKQMLPDQTKISSELFS
KSDKEDRESPSGLERETEQAEESTNMVEFMSAEDDRCLITLHLNDQSEPPVIGEPASDSHLQPVPPFGVP
DFPQQPKSHYRKHLFSESNQDSSTSELSWTSNQKKKSLKSYSSRKKTRTRSNLRILPVFPPSSGSGHEKD
QAKLLSPSEKEIPEQNNTTSPKTSEQKFQDSFAFLTAEDSAQKTELQDPHSLSELSSLKHSEDEEKPKIV
NQESLTESTSLKHKLRNLEDKDIPEGSFAKSQQSRLEEEVAPGSPFSITEERELPEGISTSSLEVVPENL
NGSAILPTFENFTKKRKRKYELRYRKRPFNSENAKKAPDCLIKLLNQMQLFRLNKLERFQNLVLQELSSL
KQDIQALEHLEKEVLEFWGKQSADLQSFCDLQVLRFNSTQTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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