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Report for CCDS11635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11635.1 Public Homo sapiens 17 MARCHF10 24 110 108 CCDS HistoryNCBI Gene:162333Re-query CCDS DB by CCDS ID:11635.1Re-query CCDS DB by GeneID:162333See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11635.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311269.10 ENSP00000311496.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311269.10Link to Ensembl Protein Viewer:ENSP00000311496.5Re-query CCDS DB by Nucleotide ID:ENST00000311269Re-query CCDS DB by Protein ID:ENSP00000311496
Original member Current member EBI ENST00000456609.6 ENSP00000416177.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456609.6Link to Ensembl Protein Viewer:ENSP00000416177.2Re-query CCDS DB by Nucleotide ID:ENST00000456609Re-query CCDS DB by Protein ID:ENSP00000416177
Original member Current member NCBI NM_001100875.3 NP_001094345.1 Accepted alive Link to Nucleotide Sequence:NM_001100875.3Link to Protein Sequence:NP_001094345.1Re-query CCDS DB by Nucleotide ID:NM_001100875Re-query CCDS DB by Protein ID:NP_001094345Link to BLAST:NP_001094345.1
Original member Current member NCBI NM_152598.4 NP_689811.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152598.4Link to Protein Sequence:NP_689811.2Re-query CCDS DB by Nucleotide ID:NM_152598Re-query CCDS DB by Protein ID:NP_689811Link to BLAST:NP_689811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094345.1 808 Q8NA82 808 100% 0 0
NP_689811.2 808 Q8NA82 808 100% 0 0

Chromosomal Locations for CCDS 11635.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 62701703 62701758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62705539 62705581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62711231 62711344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62722488 62722597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62724938 62725104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62735931 62737332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62744376 62744528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62759835 62760006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62788480 62788599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62801646 62801735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGTTGCATGACGCAAGGGACAGGCAGAAGTTCTTCAGCGATGTTCAGTATCTGCGGGACATGCAGCATA
AGGTGGACTCTGAGTATCAGGCTTGTCTGAGACGACAGGAATATAGAAGAGACCCAAATGAGAAGAAACG
CGATCAGTTTTGGGGGCAAGAGACAAGTTTTGAGAGATCCCGGTTTTCTAGCAGGTCATCTTCCAAACAG
AGTTCTAGTGAGGAGGATGCTCTAACTGAACCAAGGTCATCTATCAAGATATCTGCATTTAAGTGTGACT
CCAAACTTCCAGCAATTGACCAAACATCAGTCAAGCAGAAACATAAAAGTACCATGACTGTAAGGAAAGC
AGAGAAAGTGGACCCCAGCGAACCCTCTCCAGCAGACCAAGCACCAATGGTTTTATTAAGAAAGAGGAAG
CCAAACCTGAGGAGATTTACAGTCAGCCCAGAATCGCACAGCCCGAGAGCATCTGGGGACAGAAGCAGAC
AGAAACAGCAGTGGCCTGCAAAGGTGCCGGTTCCCAGGGGAGCAGATCAAGTAGTTCAACAAGAAGGCCT
GATGTGTAACACTAAGCTGAAGAGGCCAAATCAAGAGAGAAGAAACTTGGTCCCATCGTCACAGCCAATG
ACTGAGAACGCCCCTGATAGAGCCAAAAAAGGAGACCCGAGTGCTCCTTCCCAGAGTGAGCTGCATCCAG
CCCTGTCCCAGGCCTTCCAAGGAAAAAATAGTCCTCAAGTATTGAGTGAGTTCTCGGGGCCACCACTCAC
ACCCACCACTGTAGGAGGGCCAAGAAAGGCATCATTTAGGTTCCGAGATGAAGACTTTTATTCCATTTTG
TCATTGAACAGCAGAAGAGAAAGCGATGACACTGAAGAGGAAACCCAGTCTGAAGAATGTCTGTGGGTTG
GTGTGCGCTCACCCTGTTCTCCTTCCCATCACAAAAGAAGTAGATTTGGGGGGACATCGACCCCTCAGGC
CAAAAATAAAAATTTTGAAGAAAATGCTGAAAATTGCAGAGGTCATTCTTCAAGAAGAAGTGAGCCCAGT
CATGGCTCATTGAGAATAAGCAATGCAATGGAGCCAGCAACAGAGCGGCCTTCTGCTGGGCAAAGGTTGT
CCCAAGACCCCGGGCTGCCTGATAGGGAATCTGCTACAGAGAAGGACAGAGGTGGCAGTGAAAATGCGAA
AAAGAGCCCTCTTTCGTGGGACACCAAATCCGAGCCCAGACAAGAGGTTGGTGTCAATGCTGAAAATGTA
TGGAGTGATTGTATTTCTGTGGAACATAGGCCTGGCACCCATGATTCTGAAGGATACTGGAAAGACTATT
TAAACAGTTCTCAAAATTCTCTTGACTACTTTATTTCTGGCAGACCAATATCTCCAAGATCATCAGTGAA
TTCATCCTATAACCCTCCTGCATCATTCATGCATTCTGCTCTGAGAGATGATATTCCAGTAGACTTGTCA
ATGTCATCGACTTCAGTTCACAGCTCAGACTCAGAGGGAAACTCAGGGTTTCATGTTTGCCAACCACTGT
CTCCCATTAGAAATAGGACTCCATTTGCCAGTGCCGAAAACCATAATTATTTCCCAGTAAACAGTGCACA
CGAATTTGCTGTCAGGGAAGCAGAAGATACTACTTTAACAAGCCAGCCTCAGGGGGCTCCACTATATACA
GATCTCTTACTAAATCCACAGGGCAATTTGTCCTTAGTGGATTCTTCCAGCTCCTCTCCATCAAGAATGA
ACTCAGAAGGCCATTTGCATGTGTCTGGGTCTCTGCAAGAAAATACACCATTTACTTTCTTTGCAGTGTC
TCATTTCCCAAATCAAAATGATAATGGGAGCAGGATGGCAGCCTCTGGTTTCACAGATGAAAAGGAAACC
AGTAAGATAAAGGCAGACCCTGAGAAACTCAAGAAATTGCAAGAAAGTCTCCTGGAGGAGGACTCCGAGG
AGGAGGGAGACTTGTGTCGCATCTGTCAGATAGCCGGGGGTTCCCCAAGCAACCCCCTCCTGGAGCCTTG
CGGCTGTGTGGGAAGCCTGCAGTTTGTTCATCAAGAGTGCCTGAAAAAGTGGCTGAAAGTGAAAATAACA
TCAGGAGCAGATCTTGGTGCCGTGAAGACCTGTGAGATGTGTAAGCAAGGCCTGCTGGTTGACCTGGGTG
ACTTTAACATGATTGAGTTCTACCAGAAGCACCAGCAATCTCAGGCACAAAACGAGCTGATGAATTCAGG
CTTGTACCTGGTGCTGCTGCTTCACCTCTATGAGCAGAGGTTTGCAGAACTCATGAGGCTCAACCACAAC
CAGGTGGAAAGAGAGAGGTTGTCAAGAAATTACCCACAACCCAGAACAGAGGAAAATGAAAATTCGGAGT
TGGGAGATGGAAATGAAGGCAGCATTTCTCAAAGCCAGGTCGTCTAG

Translation (808 aa):
MLHDARDRQKFFSDVQYLRDMQHKVDSEYQACLRRQEYRRDPNEKKRDQFWGQETSFERSRFSSRSSSKQ
SSSEEDALTEPRSSIKISAFKCDSKLPAIDQTSVKQKHKSTMTVRKAEKVDPSEPSPADQAPMVLLRKRK
PNLRRFTVSPESHSPRASGDRSRQKQQWPAKVPVPRGADQVVQQEGLMCNTKLKRPNQERRNLVPSSQPM
TENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVGGPRKASFRFRDEDFYSIL
SLNSRRESDDTEEETQSEECLWVGVRSPCSPSHHKRSRFGGTSTPQAKNKNFEENAENCRGHSSRRSEPS
HGSLRISNAMEPATERPSAGQRLSQDPGLPDRESATEKDRGGSENAKKSPLSWDTKSEPRQEVGVNAENV
WSDCISVEHRPGTHDSEGYWKDYLNSSQNSLDYFISGRPISPRSSVNSSYNPPASFMHSALRDDIPVDLS
MSSTSVHSSDSEGNSGFHVCQPLSPIRNRTPFASAENHNYFPVNSAHEFAVREAEDTTLTSQPQGAPLYT
DLLLNPQGNLSLVDSSSSSPSRMNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDNGSRMAASGFTDEKET
SKIKADPEKLKKLQESLLEEDSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKIT
SGADLGAVKTCEMCKQGLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLLHLYEQRFAELMRLNHN
QVERERLSRNYPQPRTEENENSELGDGNEGSISQSQVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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