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Report for CCDS55282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55282.1 Public Homo sapiens 8 ZNF250 24 110 108 CCDS HistoryNCBI Gene:58500Re-query CCDS DB by CCDS ID:55282.1Re-query CCDS DB by GeneID:58500See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55282.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417550.7 ENSP00000393442.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417550.7Link to Ensembl Protein Viewer:ENSP00000393442.2Re-query CCDS DB by Nucleotide ID:ENST00000417550Re-query CCDS DB by Protein ID:ENSP00000393442
Original member Current member NCBI NM_001109689.4 NP_001103159.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001109689.4Link to Protein Sequence:NP_001103159.1Re-query CCDS DB by Nucleotide ID:NM_001109689Re-query CCDS DB by Protein ID:NP_001103159Link to BLAST:NP_001103159.1
Original member Current member NCBI NM_001363100.2 NP_001350029.1 Accepted alive Link to Nucleotide Sequence:NM_001363100.2Link to Protein Sequence:NP_001350029.1Re-query CCDS DB by Nucleotide ID:NM_001363100Re-query CCDS DB by Protein ID:NP_001350029Link to BLAST:NP_001350029.1
Original member Current member NCBI NM_001363101.2 NP_001350030.1 Accepted alive Link to Nucleotide Sequence:NM_001363101.2Link to Protein Sequence:NP_001350030.1Re-query CCDS DB by Nucleotide ID:NM_001363101Re-query CCDS DB by Protein ID:NP_001350030Link to BLAST:NP_001350030.1
Original member Current member NCBI NM_001363102.2 NP_001350031.1 Accepted alive Link to Nucleotide Sequence:NM_001363102.2Link to Protein Sequence:NP_001350031.1Re-query CCDS DB by Nucleotide ID:NM_001363102Re-query CCDS DB by Protein ID:NP_001350031Link to BLAST:NP_001350031.1
Original member Current member NCBI NM_001363103.2 NP_001350032.1 Accepted alive Link to Nucleotide Sequence:NM_001363103.2Link to Protein Sequence:NP_001350032.1Re-query CCDS DB by Nucleotide ID:NM_001363103Re-query CCDS DB by Protein ID:NP_001350032Link to BLAST:NP_001350032.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103159.1 555 P15622-3 555 100% 0 0
NP_001350029.1 555 P15622-3 555 100% 0 0
NP_001350030.1 555 P15622-3 555 100% 0 0
NP_001350031.1 555 P15622-3 555 100% 0 0
NP_001350032.1 555 P15622-3 555 100% 0 0

Chromosomal Locations for CCDS 55282.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144881515 144882836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144886840 144886902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144889581 144889694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144889933 144890059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144890308 144890349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCAGCAGCCAGACTCCTGCCAGTGCCGGCAGGACCCCAGGCCAAGCTGACCTTCGAGGATGTGGCTG
TGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGTCTCTACAGAAATGTGATGAT
GGAAACCTATGGGAATGTAGTCTCATTGGGACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAG
CGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACT
CAGACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGGAATG
TGAAACCAAGGGAGAGAGTCAAAATACAGACTTGAGTCCGAAGCCATTAATTTCAGAGCAAACAGTGATT
CTGGGGAAAACACCCTTGGGGAGGATTGATCAAGAAAATAATGAAACAAAGCAAAGCTTCTGTCTGAGTC
CAAACTCTGTTGACCACCGTGAAGTTCAGGTCTTAAGCCAAAGCATGCCACTCACTCCGCACCAGGCAGT
GCCTAGTGGAGAGAGGCCCTACATGTGTGTTGAGTGTGGGAAGTGCTTTGGCCGGAGTTCCCACCTCCTT
CAGCATCAGCGTATCCACACTGGAGAGAAGCCCTATGTGTGCAGTGTATGTGGGAAGGCCTTCAGCCAGA
GCTCAGTCCTTAGTAAACACAGGAGAATTCACACAGGTGAGAAGCCCTATGAGTGTAATGAGTGTGGAAA
AGCCTTTAGAGTGAGCTCAGATCTTGCTCAGCATCACAAGATACATACAGGAGAGAAGCCTCACGAATGT
CTTGAGTGTCGGAAAGCCTTCACTCAACTCTCACATCTCATTCAGCACCAGCGGATCCACACGGGAGAAA
GGCCATATGTGTGTCCGTTGTGTGGGAAAGCCTTCAACCATAGCACTGTTCTGCGGAGCCACCAGAGGGT
ACACACTGGGGAGAAGCCTCACAGGTGCAATGAGTGTGGGAAAACCTTCAGTGTGAAGAGGACACTGCTG
CAGCACCAGAGGATCCACACCGGGGAGAAGCCCTACACGTGCAGCGAGTGTGGGAAGGCCTTCAGCGACC
GCTCAGTCCTCATTCAGCACCACAACGTGCACACCGGGGAGAAGCCCTATGAGTGCAGTGAGTGTGGGAA
GACCTTCAGCCACCGCTCCACACTGATGAATCACGAGCGGATCCACACCGAGGAAAAGCCCTATGCATGC
TACGAATGTGGGAAGGCCTTCGTTCAGCACTCACACCTGATCCAGCACCAGAGAGTCCACACTGGGGAGA
AGCCCTATGTGTGTGGTGAATGTGGGCACGCCTTCAGTGCACGCCGGTCTCTGATCCAGCATGAGAGAAT
CCACACAGGTGAAAAGCCCTTCCAGTGCACAGAATGTGGCAAAGCCTTCAGCCTGAAAGCAACTCTGATT
GTGCACCTGAGGACCCACACGGGCGAGAAGCCATATGAGTGCAATAGCTGCGGGAAGGCCTTCAGCCAGT
ACTCAGTGCTCATCCAGCACCAGCGGATCCACACAGGCGAGAAGCCCTATGAGTGCGGGGAGTGTGGGCG
TGCCTTCAACCAGCATGGCCACCTAATCCAGCACCAGAAAGTGCACAGAAAGTTGTGA

Translation (555 aa):
MAAARLLPVPAGPQAKLTFEDVAVLLSQDEWDRLCPAQRGLYRNVMMETYGNVVSLGLPGSKPDIISQLE
RGEDPWVLDRKGAKKSQGLWSDYSDNLKYDHTTACTQQDSLSCPWECETKGESQNTDLSPKPLISEQTVI
LGKTPLGRIDQENNETKQSFCLSPNSVDHREVQVLSQSMPLTPHQAVPSGERPYMCVECGKCFGRSSHLL
QHQRIHTGEKPYVCSVCGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHEC
LECRKAFTQLSHLIQHQRIHTGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSVKRTLL
QHQRIHTGEKPYTCSECGKAFSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIHTEEKPYAC
YECGKAFVQHSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQCTECGKAFSLKATLI
VHLRTHTGEKPYECNSCGKAFSQYSVLIQHQRIHTGEKPYECGECGRAFNQHGHLIQHQKVHRKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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