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Report for CCDS4179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4179.1 Public Homo sapiens 5 C5orf24 24 110 108 CCDS HistoryNCBI Gene:134553Re-query CCDS DB by CCDS ID:4179.1Re-query CCDS DB by GeneID:134553See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4179.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338051.4 ENSP00000337044.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338051.4Link to Ensembl Protein Viewer:ENSP00000337044.4Re-query CCDS DB by Nucleotide ID:ENST00000338051Re-query CCDS DB by Protein ID:ENSP00000337044
Original member Current member EBI ENST00000394976.4 ENSP00000378427.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394976.4Link to Ensembl Protein Viewer:ENSP00000378427.3Re-query CCDS DB by Nucleotide ID:ENST00000394976Re-query CCDS DB by Protein ID:ENSP00000378427
Original member Current member EBI ENST00000435259.2 ENSP00000395764.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435259.2Link to Ensembl Protein Viewer:ENSP00000395764.2Re-query CCDS DB by Nucleotide ID:ENST00000435259Re-query CCDS DB by Protein ID:ENSP00000395764
Original member Current member NCBI NM_001135586.1 NP_001129058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135586.1Link to Protein Sequence:NP_001129058.1Re-query CCDS DB by Nucleotide ID:NM_001135586Re-query CCDS DB by Protein ID:NP_001129058Link to BLAST:NP_001129058.1
Original member Current member NCBI NM_152409.3 NP_689622.2 Accepted alive Link to Nucleotide Sequence:NM_152409.3Link to Protein Sequence:NP_689622.2Re-query CCDS DB by Nucleotide ID:NM_152409Re-query CCDS DB by Protein ID:NP_689622Link to BLAST:NP_689622.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129058.1 188 Q7Z6I8-1 188 100% 0 0
NP_689622.2 188 Q7Z6I8-1 188 100% 0 0

Chromosomal Locations for CCDS 4179.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134854901 134855467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGATGCATCCTGTTGCCAGCAGTAATCCAGCTTTCTGTGGGCCTGGCAAGCCTTCCTGCCTCAATGAAG
ATGCCATGAGAGCTGCTGATCAGTTTGACATATATTCCTCCCAGCAAAGCAAATACAGCCACACAGTCAA
CCACAAACCAATGGTTTGTCAGAGGCAAGACCCATTAAATGAAACACACTTGCAGACTACAAGTGGCAGA
AGCATAGAAATAAAAGATGAACTAAAGAAAAAGAAGAATCTCAACCGATCTGGTAAGCGTGGCCGGCCTT
CGGGAACCACCAAATCAGCAGGATACCGGACCAGCACAGGCAGACCCCTGGGAACCACCAAAGCAGCTGG
ATTTAAGACAAGTCCAGGCAGACCTTTGGGGACAACTAAAGCTGCGGGATACAAAGTCAGCCCAGGCAGA
CCTCCAGGTAGCATTAAAGCTCTATCCCGTCTTGCCGATCTTGGTTATGGCTGTGGCACTGCTGCTTTTC
CTTACCCTATGATGCATGGCAGAGCAGTTCATGGGGTAGAGGAAACTAGCAGTGAAGTCAAACCACCCAA
TGAGTGA

Translation (188 aa):
MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVNHKPMVCQRQDPLNETHLQTTSGR
SIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGR
PPGSIKALSRLADLGYGCGTAAFPYPMMHGRAVHGVEETSSEVKPPNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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