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Report for CCDS41831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41831.1 Public Homo sapiens 12 IFT81 24 110 108 CCDS HistoryNCBI Gene:28981Re-query CCDS DB by CCDS ID:41831.1Re-query CCDS DB by GeneID:28981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242591.10 ENSP00000242591.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242591.10Link to Ensembl Protein Viewer:ENSP00000242591.5Re-query CCDS DB by Nucleotide ID:ENST00000242591Re-query CCDS DB by Protein ID:ENSP00000242591
Original member Current member EBI ENST00000552912.5 ENSP00000449718.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552912.5Link to Ensembl Protein Viewer:ENSP00000449718.1Re-query CCDS DB by Nucleotide ID:ENST00000552912Re-query CCDS DB by Protein ID:ENSP00000449718
Original member Current member NCBI NM_001143779.2 NP_001137251.1 Accepted alive Link to Nucleotide Sequence:NM_001143779.2Link to Protein Sequence:NP_001137251.1Re-query CCDS DB by Nucleotide ID:NM_001143779Re-query CCDS DB by Protein ID:NP_001137251Link to BLAST:NP_001137251.1
Original member Current member NCBI NM_014055.4 NP_054774.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014055.4Link to Protein Sequence:NP_054774.2Re-query CCDS DB by Nucleotide ID:NM_014055Re-query CCDS DB by Protein ID:NP_054774Link to BLAST:NP_054774.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137251.1 676 Q8WYA0-1 676 100% 0 0
NP_054774.2 676 Q8WYA0-1 676 100% 0 0

Chromosomal Locations for CCDS 41831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110127381 110127524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110128046 110128149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110128950 110129130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110132547 110132636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110134948 110135013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110135327 110135437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110136776 110136860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110143382 110143545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110146953 110147048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110162919 110163065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110180422 110180571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110190920 110191048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110192617 110192706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110203864 110203950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110205443 110205514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110205595 110205680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110209171 110209216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110218044 110218226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGAGTGATCAAATTAAATTCATTATGGACAGTCTCAATAAGGAGCCCTTTAGGAAGAACTATAATTTAA
TCACGTTTGATTCCTTGGAGCCAATGCAACTATTACAAGTTCTCAGTGATGTTCTGGCTGAGATTGACCC
AAAGCAACTTGTGGATATCAGAGAGGAGATGCCAGAGCAGACAGCCAAACGAATGTTGAGCCTTCTTGGT
ATTCTTAAGTACAAACCTTCAGGAAATGCCACAGATATGAGTACTTTTCGTCAGGGTTTGGTGATTGGAA
GTAAACCTGTAATTTACCCAGTGCTCCACTGGCTTCTTCAGAGGACTAATGAACTGAAGAAAAGAGCATA
TTTAGCTCGTTTTTTAATAAAACTTGAGGTACCAAGTGAGTTTCTTCAGGATGAAACTGTGGCTGACACC
AATAAACAGTATGAAGAGTTAATGGAAGCCTTTAAAACTTTGCATAAAGAATATGAGCAGCTCAAGATAT
CTGGATTTTCTACAGCAGAAATAAGAAAGGATATCAGTGCAATGGAAGAAGAAAAGGATCAGCTCATTAA
GAGAGTTGAACATTTGAAGAAAAGGGTTGAGACAGCTCAGAATCATCAATGGATGCTTAAAATAGCAAGG
CAACTTCGAGTTGAAAAAGAGAGAGAAGAATATCTTGCACAACAGAAACAGGAACAAAAGAATCAGCTAT
TTCATGCAGTGCAAAGATTGCAAAGAGTACAAAACCAGCTGAAAAGCATGCGCCAAGCTGCAGCAGATGC
AAAGCCTGAAAGTTTAATGAAGAGGCTAGAGGAGGAGATAAAATTTAATTTATATATGGTAACTGAAAAA
TTTCCTAAAGAATTAGAAAATAAGAAAAAGGAATTACATTTTTTACAAAAAGTAGTTTCAGAGCCAGCTA
TGGGCCATTCTGATCTTCTTGAACTTGAATCTAAAATAAATGAAATAAACACAGAAATTAACCAGTTGAT
TGAAAAGAAAATGATGAGAAATGAGCCCATTGAAGGCAAACTCTCACTGTATAGGCAACAGGCATCTATC
ATTTCCCGTAAAAAAGAAGCCAAAGCTGAGGAACTTCAGGAGGCCAAGGAGAAGTTAGCCAGCCTAGAGA
GAGAAGCATCAGTAAAGAGAAATCAGACCCGTGAATTTGATGGTACTGAAGTTTTAAAGGGAGATGAGTT
CAAACGATATGTCAATAAACTTCGAAGCAAGAGTACAGTTTTCAAAAAGAAGCATCAGATAATAGCTGAA
CTTAAAGCTGAATTCGGTCTTTTGCAGAGGACTGAAGAACTTCTTAAGCAACGTCATGAAAATATTCAAC
AACAACTGCAAACTATGGAGGAGAAAAAGGGTATATCTGGATATAGTTACACCCAAGAAGAGCTAGAAAG
AGTATCTGCACTGAAGAGTGAAGTTGATGAAATGAAAGGACGAACATTGGATGATATGTCTGAAATGGTG
AAAAAACTGTATTCATTGGTATCTGAAAAGAAGTCAGCTCTTGCCTCAGTTATAAAAGAGCTACGACAGT
TGCGTCAAAAATATCAAGAACTGACCCAGGAGTGTGATGAAAAGAAATCCCAGTATGATAGCTGTGCAGC
AGGCCTCGAAAGCAATCGGTCCAAATTAGAACAGGAAGTTAGAAGACTCCGTGAAGAATGTCTTCAAGAA
GAAAGTAGATACCATTATACAAATTGTATGATTAAGAACCTAGAAGTTCAACTTCGTCGTGCTACTGATG
AGATGAAGGCATATATCTCTTCTGATCAACAAGAAAAAAGAAAGGCAATTAGGGAACAGTATACCAAAAA
TACTGCTGAACAAGAAAACCTTGGAAAGAAACTTCGGGAAAAACAAAAAGTTATACGAGAAAGTCATGGT
CCAAATATGAAACAAGCAAAAATGTGGCGTGATTTGGAACAATTAATGGAATGTAAGAAACAGTGCTTTC
TGAAACAACAAAGCCAAACTTCCATTGGTCAGGTAATTCAGGAGGGTGGGGAGGACCGGCTAATACTGTG
A

Translation (676 aa):
MSDQIKFIMDSLNKEPFRKNYNLITFDSLEPMQLLQVLSDVLAEIDPKQLVDIREEMPEQTAKRMLSLLG
ILKYKPSGNATDMSTFRQGLVIGSKPVIYPVLHWLLQRTNELKKRAYLARFLIKLEVPSEFLQDETVADT
NKQYEELMEAFKTLHKEYEQLKISGFSTAEIRKDISAMEEEKDQLIKRVEHLKKRVETAQNHQWMLKIAR
QLRVEKEREEYLAQQKQEQKNQLFHAVQRLQRVQNQLKSMRQAAADAKPESLMKRLEEEIKFNLYMVTEK
FPKELENKKKELHFLQKVVSEPAMGHSDLLELESKINEINTEINQLIEKKMMRNEPIEGKLSLYRQQASI
ISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQIIAE
LKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMV
KKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQE
ESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRESHG
PNMKQAKMWRDLEQLMECKKQCFLKQQSQTSIGQVIQEGGEDRLIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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