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Report for CCDS7866.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
7866.1 |
Public |
Homo sapiens |
11 |
BDNF |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:627](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:7866.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:627](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 7866.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000356660.9 |
ENSP00000349084.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000356660.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000349084.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000356660](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000349084](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395978.7 |
ENSP00000379302.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395978.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379302.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395978](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379302](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395981.7 |
ENSP00000379305.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395981.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379305.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395981](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379305](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395983.7 |
ENSP00000379307.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395983.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379307.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395983](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379307](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000439476.6 |
ENSP00000389345.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000439476.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000389345.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000439476](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000389345](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000418212.5 |
ENSP00000400502.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000418212.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000400502.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000418212](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000400502](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000525950.5 |
ENSP00000432035.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000525950.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000432035.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000525950](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000432035](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000533246.5 |
ENSP00000432376.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000533246.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000432376.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000533246](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000432376](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000533131.5 |
ENSP00000432727.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000533131.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000432727.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000533131](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000432727](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000530861.5 |
ENSP00000435564.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000530861.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000435564.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000530861](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000435564](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000532997.5 |
ENSP00000435805.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000532997.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000435805.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000532997](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000435805](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000525528.1 |
ENSP00000437138.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000525528.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000437138.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000525528](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000437138](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143805.1 |
NP_001137277.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143805.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137277.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143805](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137277](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137277.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143806.1 |
NP_001137278.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143806.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137278.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143806](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137278](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137278.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143807.2 |
NP_001137279.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143807.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137279.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143807](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137279](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137279.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143808.2 |
NP_001137280.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143808.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137280.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137280](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137280.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143811.2 |
NP_001137283.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143811.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137283.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143811](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137283](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137283.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143812.2 |
NP_001137284.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143812.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137284.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143812](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137284](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137284.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143813.2 |
NP_001137285.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143813.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137285.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143813](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137285](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137285.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143814.2 |
NP_001137286.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143814.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137286.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143814](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137286](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137286.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001143816.2 |
NP_001137288.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001143816.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001137288.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001143816](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001137288](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001137288.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001709.5 |
NP_001700.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001709.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001700.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001709](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001700](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001700.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_170732.4 |
NP_733928.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_170732.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_733928.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_170732](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_733928](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_733928.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_170733.4 |
NP_733929.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_170733.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_733929.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_170733](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_733929](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_733929.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_170735.6 |
NP_733931.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_170735.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_733931.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_170735](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_733931](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_733931.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 7866.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (744 nt): ATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTTGGTTGCATGAAGGCTGCCCCCATGAAAGAAG CAAACATCCGAGGACAAGGTGGCTTGGCCTACCCAGGTGTGCGGACCCATGGGACTCTGGAGAGCGTGAA TGGGCCCAAGGCAGGTTCAAGAGGCTTGACATCATTGGCTGACACTTTCGAACACGTGATAGAAGAGCTG TTGGATGAGGACCAGAAAGTTCGGCCCAATGAAGAAAACAATAAGGACGCAGACTTGTACACGTCCAGGG TGATGCTCAGTAGTCAAGTGCCTTTGGAGCCTCCTCTTCTCTTTCTGCTGGAGGAATACAAAAATTACCT AGATGCTGCAAACATGTCCATGAGGGTCCGGCGCCACTCTGACCCTGCCCGCCGAGGGGAGCTGAGCGTG TGTGACAGTATTAGTGAGTGGGTAACGGCGGCAGACAAAAAGACTGCAGTGGACATGTCGGGCGGGACGG TCACAGTCCTTGAAAAGGTCCCTGTATCAAAAGGCCAACTGAAGCAATACTTCTACGAGACCAAGTGCAA TCCCATGGGTTACACAAAAGAAGGCTGCAGGGGCATAGACAAAAGGCATTGGAACTCCCAGTGCCGAACT ACCCAGTCGTACGTGCGGGCCCTTACCATGGATAGCAAAAAGAGAATTGGCTGGCGATTCATAAGGATAG ACACTTCTTGTGTATGTACATTGACCATTAAAAGGGGAAGATAG
Translation (247 aa): MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEEL LDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSV CDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRT TQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
|