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Report for CCDS54937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54937.1 Public Homo sapiens 5 SYNPO 24 110 108 CCDS HistoryNCBI Gene:11346Re-query CCDS DB by CCDS ID:54937.1Re-query CCDS DB by GeneID:11346See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394243.5 ENSP00000377789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394243.5Link to Ensembl Protein Viewer:ENSP00000377789.1Re-query CCDS DB by Nucleotide ID:ENST00000394243Re-query CCDS DB by Protein ID:ENSP00000377789
Original member Current member EBI ENST00000522122.1 ENSP00000428378.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522122.1Link to Ensembl Protein Viewer:ENSP00000428378.1Re-query CCDS DB by Nucleotide ID:ENST00000522122Re-query CCDS DB by Protein ID:ENSP00000428378
Original member Current member NCBI NM_001166208.2 NP_001159680.1 Accepted alive Link to Nucleotide Sequence:NM_001166208.2Link to Protein Sequence:NP_001159680.1Re-query CCDS DB by Nucleotide ID:NM_001166208Re-query CCDS DB by Protein ID:NP_001159680Link to BLAST:NP_001159680.1
Original member Current member NCBI NM_001166209.2 NP_001159681.1 Accepted alive Link to Nucleotide Sequence:NM_001166209.2Link to Protein Sequence:NP_001159681.1Re-query CCDS DB by Nucleotide ID:NM_001166209Re-query CCDS DB by Protein ID:NP_001159681Link to BLAST:NP_001159681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159680.1 929 Q8N3V7-1 929 100% 0 0
NP_001159681.1 929 Q8N3V7-1 929 100% 0 0

Chromosomal Locations for CCDS 54937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150618368 150618767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150647944 150650333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGCTGGGTCCTCACCTCCCACCTCCGCCCCTTGCACCCAGCGAAGGGAGGCCTACCCCCTGCGCCTTCC
AGATCCCTGATGGAAGCTACAGGTGTCTGGCTCTGGAAGCCGAGGAGAGCAGCGGTGAGGAGGGCCTGCA
GGGAGAGGTGGGGCCTACCGACCTGGAAGAGGATGAGGGGGTCAGCAGGAGTGGGGACGACTCTGCCTGC
AGAGTCACCCAGGGGACACCGCAGCTGCCCAAAGCCCTGGGCATCCAACCACCCAGCTGCTCCAGAGAGG
AACAAGGGGCGTCCCAGCACGACGACAGGGCCAGCCAGGACTGGGATGTAGTGAAGGCCGGGCAGATGAT
GACAGCCAGCCCCAGCCCTGGCCCTGGGCCCAGAGTGGCCCAGAAACCAGCGTTGGGCCGGAGCACTAGC
CTCACGGAGAAGGATCTGAAAGAAGCCAAGGCGCGGAGCCAGCAGATTGCAGCCCAGCTGACCACCCCTC
CCAGCTCCAATTCCCGTGGCGTCCAGCTCTTCAACAGGCGCCGGCAGAGGGTGAACGAGTTCACCTTGGA
GAGCCACGGCCAGAGGGGACAGAAGCCCAGCCAGGAGTCCCTCAGAGTGCTCCCTTCAAGCCTCCCAGGC
CATGCACCGGGGCTCAGCCTGAGTTCCACCTCGCTGCCGGAGCCAGGCCCTCCACGGCACCCCAGTCCCC
AGAGCCCCGACAGAGGGGTCCCTGGCCACAGCATGGAGGGGTACTCAGAGGAGGCTAGCTTGCTGCGGCA
CCTGGAGAAGGTGGCCAGTGAGGAGGAAGAGGTACCACTGGTGGTTTATCTAAAGGAGAATGCAGCACTG
CTGACAGCCAATGGGCTGCACCTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCCACCTCCAG
CTGAGGTCCACAGCCCAGCTGCAGATGTCAACCAAAACCTTGCCTCGCCCAGTGCCACGCTCACCACACC
AACTTCTAACAGCAGCCACAATCCGCCAGCCACCGATGTCAATCAGAACCCACCGGCAACTGTTGTCCCA
CAGAGCCTGCCACTTTCTAGCATCCAACAGAATTCCTCAGAGGCCCAACTCCCATCTAATGGCACAGGGC
CTGCTTCCAAACCCAGCACCCTGTGTGCTGATGGGCAACCCCAGGCACCGGCTGAGGAGGTGAGATGCAG
CACACTCCTAATTGACAAGGTATCAACTCCAGCTACCACCACCAGCACCTTCTCCAGAGAAGCTACGCTC
ATCCCCAGCTCCAGGCCCCCAGCCTCAGATTTCATGTCCAGCTCCCTGCTCATTGACATCCAGCCCAACA
CCCTAGTGGTGTCAGCAGATCAAGAGATGTCTGGGCGAGCAGCTGCCACCACGCCCACCAAGGTCTACAG
TGAGGTCCACTTCACACTGGCCAAGCCCCCATCAGTGGTCAACAGGACGGCCAGGCCTTTTGGGATCCAG
GCGCCAGGGGGCACCAGCCAGATGGAGAGGAGCCCCATGCTAGAGAGACGACATTTTGGGGAGAAGGCCC
CGGCTCCCCAGCCCCCCAGTTTGCCAGACAGGAGCCCCCGGCCACAGAGACACATAATGTCCCGCAGCCC
CATGGTGGAAAGGAGGATGATGGGGCAGCGAAGCCCGGCCTCAGAGAGACGCCCCTTGGGGAACTTCACT
GCACCCCCCACCTACACTGAGACCTTGTCCACAGCCCCTCTGGCTTCCTGGGTGAGGTCTCCTCCCTCAT
ATTCTGTCCTGTATCCCAGCTCCGACCCCAAGTCTTCTCATCTGAAGGGCCAGGCGGTTCCTGCCAGCAA
GACGGGCATTCTGGAGGAGTCGATGGCCCGCCGGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAG
CCCAAGGTGACCCCGAATCCAGACTTGCTGGATCTGGTACAGACAGCGGATGAGAAGCGGCGGCAGAGGG
ACCAGGGGGAGGTAGGCGTGGAGGAGGAGCCCTTCGCACTGGGGGCCGAGGCCTCCAACTTCCAGCAGGA
GCCAGCACCTCGTGACAGGGCCAGCCCCGCGGCGGCGGAGGAGGTGGTACCAGAGTGGGCCTCCTGCCTC
AAGTCACCCCGCATCCAGGCCAAGCCGAAGCCCAAACCCAACCAGAACCTCTCCGAGGCCTCTGGGAAGG
GAGCTGAGCTCTACGCCCGCCGCCAGTCACGGATGGAGAAATATGTCATCGAGTCTTCAAGCCACACGCC
AGAGCTGGCCCGCTGCCCATCACCTACCATGTCCCTGCCTTCCTCCTGGAAATACCCCACTAACGCCCCC
GGGGCCTTCCGAGTGGCATCCCGAAGCCCAGCCCGGACCCCGCCTGCCTCCCTCTACCATGGCTACCTGC
CTGAGAACGGGGTCCTGCGCCCAGAGCCCACCAAGCAGCCGCCATACCAGCTGCGCCCCTCGCTCTTTGT
CCTCTCACCTATCAAGGAGCCTGCCAAGGTCTCACCAAGAGCTGCCTCGCCCGCCAAGCCCAGCTCCTTG
GACCTGGTGCCCAACCTGCCCAAGGGGGCTCTCCCTCCATCTCCTGCCCTGCCTCGGCCCTCGCGCTCCT
CACCGGGCCTCTACACCTCCCCCGGCCAGGACAGCCTGCAGCCCACTGCCGTGAGCCCTCCTTACGGCGG
TGACATCTCCCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAGGCCCCCAGGCCCTCCTTC
TCTACCCGGAACGCCGGGATCGAGGCTCAGGTGTGGAAGCCTTCCTTCTGCTTCAAGTAA

Translation (929 aa):
MLGPHLPPPPLAPSEGRPTPCAFQIPDGSYRCLALEAEESSGEEGLQGEVGPTDLEEDEGVSRSGDDSAC
RVTQGTPQLPKALGIQPPSCSREEQGASQHDDRASQDWDVVKAGQMMTASPSPGPGPRVAQKPALGRSTS
LTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTLESHGQRGQKPSQESLRVLPSSLPG
HAPGLSLSSTSLPEPGPPRHPSPQSPDRGVPGHSMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAAL
LTANGLHLSQNREAQQSSPAPPPAEVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVP
QSLPLSSIQQNSSEAQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATL
IPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVVNRTARPFGIQ
APGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFT
APPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEK
PKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEPFALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCL
KSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAP
GAFRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSL
DLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSF
STRNAGIEAQVWKPSFCFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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