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Report for CCDS54201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54201.1 Public Homo sapiens 19 UBXN6 24 110 108 CCDS HistoryNCBI Gene:80700Re-query CCDS DB by CCDS ID:54201.1Re-query CCDS DB by GeneID:80700See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394765.7 ENSP00000378246.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394765.7Link to Ensembl Protein Viewer:ENSP00000378246.2Re-query CCDS DB by Nucleotide ID:ENST00000394765Re-query CCDS DB by Protein ID:ENSP00000378246
Original member Current member NCBI NM_001171091.2 NP_001164562.1 Accepted alive Link to Nucleotide Sequence:NM_001171091.2Link to Protein Sequence:NP_001164562.1Re-query CCDS DB by Nucleotide ID:NM_001171091Re-query CCDS DB by Protein ID:NP_001164562Link to BLAST:NP_001164562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164562.1 388 Q9BZV1-2 388 100% 0 0

Chromosomal Locations for CCDS 54201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4445498 4445623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446049 4446197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446283 4446413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446500 4446719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446836 4446920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4447550 4447625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4448318 4448415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4452364 4452492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4453458 4453522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4453930 4454017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGCAGCCGCTGCCGCCCTAGCCCGGCTGGAGCAGAAGCAGTCCCGGGCCTGGGGCCCCACATCGCAGG
ACACCATCCGAAACCAGGTGAGAAAGGAACTTCAAGCCGAAGCCACCGTCAGCGGGAGCCCCGAGGCCCC
AGGGACCAACGTGGTATCTGAGCCCAGAGAGGAAGGCTCTGCCCACCTGGCTGTGCCTGGCGTGTACTTC
ACCTGTCCGCTCACTGGGGCCACCCTGAGGAAGGACCAGCGGGACGCCTGCATCAAGGAGGCCATTCTCT
TGCACTTCTCCACCGACCCAGTGGCCGCCTCCATCATGAAGATCTACACGTTCAACAAAGACCAGGACCG
GGTGAAGCTGGGTGTGGACACCATTGCCAAGTACCTGGACAACATCCACCTGCACCCCGAGGAGGAGAAG
TACCGGAAGATCAAGCTGCAGAACAAGGTGTTTCAGGAGCGCATTAACTGCCTGGAAGGGACCCACGAGT
TTTTTGAGGCCATTGGGTTCCAGAAGGTGTTGCTTCCCGCCCAGGATCAGGAGGACCCCGAGGAGTTCTA
CGTGCTGAGCGAGACCACCTTGGCCCAGCCCCAGAGCCTGGAGAGGCACAAGGAACAGCTGCTGGCTGCG
GAGCCCGTGCGCGCCAAGCTGGACAGGCAGCGCCGCGTCTTCCAGCCCTCGCCCCTGGCCTCGCAGTTCG
AACTGCCTGGGGACTTCTTCAACCTCACAGCAGAGGAGATCAAGCGGGAGCAGAGGCTCAGGTCCGAGGC
GGTGGAGCGGCTGAGCGTGCTGCGGACCAAGGCCATGCGGGAGAAGGAGGAGCAGCGGGGGCTGCGCAAG
TACAACTACACGCTGCTGCGCGTGCGCCTCCCCGATGGCTGCCTCCTGCAGGGCACTTTCTACGCTCGGG
AGCGGCTGGGGGCGGTGTACGGGTTCGTCCGGGAGGCCCTGCAGAGCGACTGGCTGCCTTTTGAGCTGCT
GGCCTCGGGAGGGCAGAAGCTGTCCGAGGACGAGAACCTGGCCTTGAACGAGTGCGGGCTGGTGCCCTCT
GCCCTCCTGACCTTCTCGTGGGACATGGCTGTGCTGGAGGACATCAAGGCCGCGGGGGCCGAGCCGGACT
CCATCCTGAAACCCGAGCTCCTGTCAGCCATCGAGAAGCTCTTGTGA

Translation (388 aa):
MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYF
TCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEK
YRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA
EPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRK
YNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPS
ALLTFSWDMAVLEDIKAAGAEPDSILKPELLSAIEKLL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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