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Report for CCDS55191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55191.1 Public Homo sapiens 8 MCPH1 24 110 108 CCDS HistoryNCBI Gene:79648Re-query CCDS DB by CCDS ID:55191.1Re-query CCDS DB by GeneID:79648See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55191.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522905.1 ENSP00000430768.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522905.1Link to Ensembl Protein Viewer:ENSP00000430768.1Re-query CCDS DB by Nucleotide ID:ENST00000522905Re-query CCDS DB by Protein ID:ENSP00000430768
Original member Current member NCBI NM_001172575.2 NP_001166046.1 Accepted alive Link to Nucleotide Sequence:NM_001172575.2Link to Protein Sequence:NP_001166046.1Re-query CCDS DB by Nucleotide ID:NM_001172575Re-query CCDS DB by Protein ID:NP_001166046Link to BLAST:NP_001166046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166046.1 562 Q8NEM0-2 562 100% 0 0

Chromosomal Locations for CCDS 55191.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 6406668 6406689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6409279 6409370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6414765 6414883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6431499 6431586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6436048 6436162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6442067 6442156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6444393 6445555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGCGGCCCCCATCCTGAAAGATGTAGTGGCCTATGTTGAAGTGTGGTCATCCAATGGAACAGAAAATT
ATTCAAAGACATTTACAACACAGCTTGTGGATATGGGGGCAAAGGTTTCAAAAACTTTTAACAAACAAGT
AACTCACGTTATCTTCAAAGATGGCTACCAGAGCACTTGGGACAAAGCTCAGAAGAGAGGCGTAAAGCTC
GTTTCGGTGCTCTGGGTGGAAAAATGCAGGACAGCTGGAGCACACATTGATGAATCATTGTTCCCTGCAG
CTAATATGAATGAACACTTATCAAGCCTAATTAAAAAAAAACGTAAATGTATGCAGCCCAAAGATTTTAA
TTTTAAAACACCAGAAAATGATAAGAGATTTCAGAAGAAATTTGAGAAAATGGCTAAAGAGCTACAAAGG
CAAAAAACAAATCTAGCTTCCCAAATGATTCAGCAGTCTCATGATAATCCAAGTAACTCTCTGTGTGAAG
CACCTTTGAACATTTCACGTGATACTTTGTGTTCAGATGAATACTTTGCTGGTGGCTTACACTCATCTTT
TGATGATCTTTGTGGAAACTCAGGATGTGGAAATCAGGAAAGGAAGTTGGAAGGATCCATTAATGACATT
AAAAGTGATGTGTGTATTTCTTCACTTGTATTGAAAGCAAATAATATTCATTCATCACCATCTTTCACTC
ACCTCGATAAATCAAGTCCTCAGAAATTTCTGAGTAATCTTTCAAAGGAAGAAATAAACTTGCAAAGAAA
TATTGCAGGTAAAGTAGTCACCCCTGACCAAAAGCAGGCTGCAGGTATGTCTCAGGAGACGTTTGAAGAG
AAGTATCGTTTGTCTCCTACCTTATCTTCAACAAAAGGCCACCTTTTGATACATTCAAGACCCAGGAGTT
CCTCAGTAAAGAGAAAAAGAGTATCACATGGCTCCCATTCACCTCCGAAGGAAAAATGCAAGAGAAAGAG
GAGCACCAGGAGATCTATCATGCCGAGGCTGCAGCTGTGCAGGTCGGAAGACAGGCTGCAGCACGTGGCG
GGACCTGCCCTGGAGGCTCTTAGCTGTGGGGAGTCTTCATATGATGACTATTTTTCACCTGATAATCTTA
AGGAAAGGTATTCAGAGAATCTTCCTCCTGAATCTCAGCTGCCATCAAGCCCTGCTCAGTTGAGCTGCAG
AAGTCTTTCTAAGAAGGAGAGAACAAGCATATTTGAAATGTCTGATTTTTCCTGCGTTGGCAAAAAAACC
AGAACAGTTGACATTACCAATTTCACAGCAAAAACCATCTCCAGTCCTCGGAAAACTGGAAATGGTGAAG
GCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGAAGCCCTAAGGTGTTGTAGACAGGCTGGGAA
AGAAGACGCATGCCCAGAGGGAAATGGCTTTTCTTACACCATTGAGGACCCTGCTCTTCCAAAAGGACAT
GATGATGATTTAACTCCTTTGGAAGGAAGCCTTGAAGAAATGAAAGAAGCGGTTGGTCTGAAAAGCACAC
AGAACAAAGGTACCACTTCCAAAATATCAAACTCCTCTGAAGGCGAAGCCCAGAGTGAACATGAGCCATG
TTTTATAGTTGACTGTAACATGGAGACGTCTACAGAAGAGAAGGAAAACTTACCCGGAGGATACAGTGGA
AGTATGTGA

Translation (562 aa):
MAAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKL
VSVLWVEKCRTAGAHIDESLFPAANMNEHLSSLIKKKRKCMQPKDFNFKTPENDKRFQKKFEKMAKELQR
QKTNLASQMIQQSHDNPSNSLCEAPLNISRDTLCSDEYFAGGLHSSFDDLCGNSGCGNQERKLEGSINDI
KSDVCISSLVLKANNIHSSPSFTHLDKSSPQKFLSNLSKEEINLQRNIAGKVVTPDQKQAAGMSQETFEE
KYRLSPTLSSTKGHLLIHSRPRSSSVKRKRVSHGSHSPPKEKCKRKRSTRRSIMPRLQLCRSEDRLQHVA
GPALEALSCGESSYDDYFSPDNLKERYSENLPPESQLPSSPAQLSCRSLSKKERTSIFEMSDFSCVGKKT
RTVDITNFTAKTISSPRKTGNGEGRATSSCVTSAPEEALRCCRQAGKEDACPEGNGFSYTIEDPALPKGH
DDDLTPLEGSLEEMKEAVGLKSTQNKGTTSKISNSSEGEAQSEHEPCFIVDCNMETSTEEKENLPGGYSG
SM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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