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Report for CCDS4605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4605.1 Public Homo sapiens 6 BTN3A2 24 110 108 CCDS HistoryNCBI Gene:11118Re-query CCDS DB by CCDS ID:4605.1Re-query CCDS DB by GeneID:11118See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4605.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356386.6 ENSP00000348751.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356386.6Link to Ensembl Protein Viewer:ENSP00000348751.2Re-query CCDS DB by Nucleotide ID:ENST00000356386Re-query CCDS DB by Protein ID:ENSP00000348751
Original member Current member EBI ENST00000377708.7 ENSP00000366937.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377708.7Link to Ensembl Protein Viewer:ENSP00000366937.2Re-query CCDS DB by Nucleotide ID:ENST00000377708Re-query CCDS DB by Protein ID:ENSP00000366937
Original member Current member EBI ENST00000396948.5 ENSP00000380152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396948.5Link to Ensembl Protein Viewer:ENSP00000380152.1Re-query CCDS DB by Nucleotide ID:ENST00000396948Re-query CCDS DB by Protein ID:ENSP00000380152
Original member Current member EBI ENST00000527422.5 ENSP00000432138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527422.5Link to Ensembl Protein Viewer:ENSP00000432138.1Re-query CCDS DB by Nucleotide ID:ENST00000527422Re-query CCDS DB by Protein ID:ENSP00000432138
Original member Current member NCBI NM_001197246.2 NP_001184175.1 Accepted alive Link to Nucleotide Sequence:NM_001197246.2Link to Protein Sequence:NP_001184175.1Re-query CCDS DB by Nucleotide ID:NM_001197246Re-query CCDS DB by Protein ID:NP_001184175Link to BLAST:NP_001184175.1
Original member Current member NCBI NM_001197247.3 NP_001184176.1 Accepted alive Link to Nucleotide Sequence:NM_001197247.3Link to Protein Sequence:NP_001184176.1Re-query CCDS DB by Nucleotide ID:NM_001197247Re-query CCDS DB by Protein ID:NP_001184176Link to BLAST:NP_001184176.1
Original member Current member NCBI NM_007047.5 NP_008978.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007047.5Link to Protein Sequence:NP_008978.2Re-query CCDS DB by Nucleotide ID:NM_007047Re-query CCDS DB by Protein ID:NP_008978Link to BLAST:NP_008978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184175.1 334 P78410-1 334 100% 0 0
NP_001184176.1 334 P78410-1 334 100% 0 0
NP_008978.2 334 P78410-1 334 100% 0 0

Chromosomal Locations for CCDS 4605.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26368183 26368267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26368565 26368912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26370322 26370603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26372897 26373097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26373276 26373296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26373387 26373413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26374327 26374367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAAAATGGCAAGTTCCCTGGCTTTCCTTCTGCTCAACTTTCATGTCTCCCTCCTCTTGGTCCAGCTGC
TCACTCCTTGCTCAGCTCAGTTTTCTGTGCTTGGACCCTCTGGGCCCATCCTGGCCATGGTGGGTGAAGA
CGCTGATCTGCCCTGTCACCTGTTCCCGACCATGAGTGCAGAGACCATGGAGCTGAAGTGGGTAAGTTCC
AGCCTAAGGCAGGTGGTGAACGTGTATGCAGATGGAAAGGAAGTGGAAGACAGGCAGAGTGCACCGTATC
GAGGGAGAACTTCGATTCTGCGGGATGGCATCACTGCAGGGAAGGCTGCTCTCCGAATACACAACGTCAC
AGCCTCTGACAGTGGAAAGTACTTGTGTTATTTCCAAGATGGTGACTTCTATGAAAAAGCCCTGGTGGAG
CTGAAGGTTGCAGCACTGGGTTCTAATCTTCACGTCGAAGTGAAGGGTTATGAGGATGGAGGGATCCATC
TGGAGTGCAGGTCCACCGGCTGGTACCCCCAACCCCAAATACAGTGGAGCAACGCCAAGGGAGAGAACAT
CCCAGCTGTGGAAGCACCTGTGGTTGCAGATGGAGTGGGCCTATATGAAGTAGCAGCATCTGTGATCATG
AGAGGCGGCTCCGGGGAGGGTGTATCCTGCATCATCAGAAATTCCCTCCTCGGCCTGGAAAAGACAGCCA
GCATTTCCATCGCAGACCCCTTCTTCAGGAGCGCCCAGCCCTGGATCGCAGCCCTGGCAGGGACCCTGCC
TATCTTGCTGCTGCTTCTCGCCGGAGCCAGTTACTTCTTGTGGAGACAACAGAAGGAAATAACTGCTCTG
TCCAGTGAGATAGAAAGTGAGCAAGAGATGAAAGAAATGGGATATGCTGCAACAGAGCGGGAAATAAGCC
TAAGAGAGAGCCTCCAGGAGGAACTCAAGAGGAAAAAAATCCAGTACTTGACTCGTGGAGAGGAGTCTTC
GTCCGATACCAATAAGTCAGCCTGA

Translation (334 aa):
MKMASSLAFLLLNFHVSLLLVQLLTPCSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSS
SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVE
LKVAALGSNLHVEVKGYEDGGIHLECRSTGWYPQPQIQWSNAKGENIPAVEAPVVADGVGLYEVAASVIM
RGGSGEGVSCIIRNSLLGLEKTASISIADPFFRSAQPWIAALAGTLPILLLLLAGASYFLWRQQKEITAL
SSEIESEQEMKEMGYAATEREISLRESLQEELKRKKIQYLTRGEESSSDTNKSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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