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Report for CCDS42187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42187.1 Public Homo sapiens 16 DDX19B 24 110 108 CCDS HistoryNCBI Gene:11269Re-query CCDS DB by CCDS ID:42187.1Re-query CCDS DB by GeneID:11269See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393657.6 ENSP00000377267.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393657.6Link to Ensembl Protein Viewer:ENSP00000377267.2Re-query CCDS DB by Nucleotide ID:ENST00000393657Re-query CCDS DB by Protein ID:ENSP00000377267
Original member Current member EBI ENST00000563392.5 ENSP00000456574.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563392.5Link to Ensembl Protein Viewer:ENSP00000456574.1Re-query CCDS DB by Nucleotide ID:ENST00000563392Re-query CCDS DB by Protein ID:ENSP00000456574
Original member Current member EBI ENST00000568625.5 ENSP00000456757.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568625.5Link to Ensembl Protein Viewer:ENSP00000456757.1Re-query CCDS DB by Nucleotide ID:ENST00000568625Re-query CCDS DB by Protein ID:ENSP00000456757
Original member Current member NCBI NM_001014449.3 NP_001014449.1 Accepted alive Link to Nucleotide Sequence:NM_001014449.3Link to Protein Sequence:NP_001014449.1Re-query CCDS DB by Nucleotide ID:NM_001014449Re-query CCDS DB by Protein ID:NP_001014449Link to BLAST:NP_001014449.1
Original member Current member NCBI NM_001257173.2 NP_001244102.1 Accepted alive Link to Nucleotide Sequence:NM_001257173.2Link to Protein Sequence:NP_001244102.1Re-query CCDS DB by Nucleotide ID:NM_001257173Re-query CCDS DB by Protein ID:NP_001244102Link to BLAST:NP_001244102.1
Original member Current member NCBI NM_001257174.2 NP_001244103.1 Accepted alive Link to Nucleotide Sequence:NM_001257174.2Link to Protein Sequence:NP_001244103.1Re-query CCDS DB by Nucleotide ID:NM_001257174Re-query CCDS DB by Protein ID:NP_001244103Link to BLAST:NP_001244103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014449.1 370 Q9UMR2-3 370 100% 0 0
NP_001244102.1 370 Q9UMR2-3 370 100% 0 0
NP_001244103.1 370 Q9UMR2-3 370 100% 0 0

Chromosomal Locations for CCDS 42187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 70317527 70317588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70324585 70324687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70325574 70325688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70329292 70329469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70329831 70330068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70331722 70331884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70332968 70333159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70333521 70333582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGTTTCAATCGTCCATCCAAGATACAAGAGAACGCATTGCCACTGATGCTTGCTGAGCCCCCACAGA
ACTTAATTGCCCAATCTCAGTCTGGTACTGGTAAAACAGCTGCCTTCGTGCTGGCCATGCTTAGCCAAGT
AGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCCTCCAAACAGGA
AAAGTGATTGAACAAATGGGCAAATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGAGGCAATAAAT
TGGAAAGAGGCCAGAAGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACTGTGCTGGACTGGTGCTC
CAAGCTCAAGTTCATTGATCCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCC
ACTCAGGGCCACCAAGATCAGAGCATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTT
TCTCCGCCACCTTTGAAGACTCTGTGTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAACGTTATCAA
ACTGAAGCGTGAGGAAGAGACCCTGGACACCATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAG
AAGTTCCAGGCCTTGTGTAACCTCTACGGGGCCATCACCATTGCTCAAGCCATGATCTTCTGCCATACTC
GCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCTCAAAAGAAGGCCACCAGGTGGCTCTGCTGAGTGGGGA
GATGATGGTGGAACAGAGGGCTGCAGTGATTGAGCGCTTCCGAGAGGGCAAAGAGAAGGTTTTGGTGACC
ACCAACGTGTGTGCCCGCGGCATTGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGG
ACAAGGACGGGAATCCTGACAATGAGACCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAG
GGGCCTGGCAGTGAACATGGTGGACAGCAAGCACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTT
AATAAGAAGATAGAAAGATTGGACACAGATGATTTGGACGAGATTGAGAAAATAGCCAACTGA

Translation (370 aa):
MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTG
KVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA
TQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT
TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF
NKKIERLDTDDLDEIEKIAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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