NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14316.1 Public Homo sapiens X CCDC120 24 110 108 CCDS HistoryNCBI Gene:90060Re-query CCDS DB by CCDS ID:14316.1Re-query CCDS DB by GeneID:90060See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000597275.5 ENSP00000470294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597275.5Link to Ensembl Protein Viewer:ENSP00000470294.1Re-query CCDS DB by Nucleotide ID:ENST00000597275Re-query CCDS DB by Protein ID:ENSP00000470294
Original member Current member EBI ENST00000496529.6 ENSP00000474761.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496529.6Link to Ensembl Protein Viewer:ENSP00000474761.1Re-query CCDS DB by Nucleotide ID:ENST00000496529Re-query CCDS DB by Protein ID:ENSP00000474761
Original member Current member EBI ENST00000606812.5 ENSP00000475676.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000606812.5Link to Ensembl Protein Viewer:ENSP00000475676.1Re-query CCDS DB by Nucleotide ID:ENST00000606812Re-query CCDS DB by Protein ID:ENSP00000475676
Original member Current member NCBI NM_001271835.1 NP_001258764.1 Accepted alive Link to Nucleotide Sequence:NM_001271835.1Link to Protein Sequence:NP_001258764.1Re-query CCDS DB by Nucleotide ID:NM_001271835Re-query CCDS DB by Protein ID:NP_001258764Link to BLAST:NP_001258764.1
Original member Current member NCBI NM_001271836.2 NP_001258765.1 Accepted alive Link to Nucleotide Sequence:NM_001271836.2Link to Protein Sequence:NP_001258765.1Re-query CCDS DB by Nucleotide ID:NM_001271836Re-query CCDS DB by Protein ID:NP_001258765Link to BLAST:NP_001258765.1
Original member Current member NCBI NM_033626.3 NP_296375.1 Accepted alive Link to Nucleotide Sequence:NM_033626.3Link to Protein Sequence:NP_296375.1Re-query CCDS DB by Nucleotide ID:NM_033626Re-query CCDS DB by Protein ID:NP_296375Link to BLAST:NP_296375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258764.1 630 Q96HB5-1 630 100% 0 0
NP_001258765.1 630 Q96HB5-1 630 100% 0 0
NP_296375.1 630 Q96HB5-1 630 100% 0 0

Chromosomal Locations for CCDS 14316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49062277 49062325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49062468 49062601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49063861 49064001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49064370 49064664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065036 49065098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065454 49065628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065747 49065845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49067176 49068112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGAAGTCAAAGGTCAGCTGATCAGCTCTCCTACCTTCAATGCCCCAGCTGCCCTGTTCGGAGAGGCTG
CCCCCCAGGTGAAGTCAGAGCGTCTGCGGGGGCTGCTTGACCGGCAGCGGACCCTGCAGGAGGCCCTGAG
CCTGAAACTTCAGGAGCTCCGCAAAGTGTGTCTCCAGGAGGCGGAGCTGACTGGCCAGCTGCCCCCTGAG
TGCCCACTAGAGCCTGGTGAACGGCCCCAGTTGGTCCGCCGGCGGCCCCCCACAGCCCGCGCCTACCCTC
CACCGCACCCCAACCAAGCACACCACTCCTTGTGCCCTGCTGAGGAGCTGGCTCTTGAGGCCCTGGAACG
CGAGGTGTCAGTGCAACAGCAGATCGCGGCGGCCGCCCGCCGCCTGGCCTTGGCCCCTGATCTGAGCACC
GAGCAGCGCCGGCGCCGGCGCCAGGTCCAGGCAGATGCACTGAGGAGGCTGCATGAGCTAGAGGAGCAGC
TCAGGGATGTCCGGGCCCGCCTTGGCCTCCCAGTGCTCCCGCTGCCCCAGCCACTGCCACTGTCCACGGG
GTCAGTGATCACCACCCAGGGAGTCTGCCTGGGCATGCGTCTTGCTCAGCTCAGCCAAGAGGACGTAGTT
CTGCACTCAGAGAGCAGCTCCCTCTCAGAGTCTGGGGCCAGCCATGACAACGAGGAGCCCCATGGCTGCT
TCTCTCTGGCCGAGCGCCCCTCACCACCCAAGGCTTGGGACCAGCTGCGGGCAGTATCTGGGGGGAGCCC
TGAGCGGCGAACCCCATGGAAACCACCTCCATCAGATCTTTATGGGGATCTGAAGAGCCGGCGGAACTCT
GTGGCCAGCCCCACCAGCCCCACACGCTCGCTGCCCAGGAGTGCCTCCAGTTTTGAGGGGCGAAGTGTGC
CTGCCACCCCTGTCCTCACCCGGGGCGCTGGCCCCCAGCTCTGCAAACCTGAAGGCCTTCATTCTCGTCA
GTGGTCCGGCAGCCAGGACTCCCAGATGGGCTTCCCCCGGGCGGACCCTGCCTCCGATCGCGCCTCCCTC
TTCGTAGCTCGCACCCGCCGCAGCAACAGTTCTGAGGCCCTGCTGGTGGACCGGGCCGCTGGTGGGGGAG
CTGGCTCCCCGCCTGCCCCTCTGGCTCCCTCTGCCTCTGGCCCCCCAGTCTGCAAGAGCAGTGAGGTGCT
GTATGAGCGCCCCCAACCAACCCCTGCCTTCTCCTCCCGCACAGCAGGCCCCCCAGACCCTCCCCGGGCC
GCCCGGCCTAGCTCAGCTGCCCCTGCCTCCCGAGGTGCCCCCCGGCTCCCACCTGTGTGTGGAGACTTCC
TCTTGGACTATTCCTTGGACCGGGGCCTGCCCCGCAGTGGCGGTGGAACAGGCTGGGGGGAGCTGCCGCC
TGCAGCTGAGGTCCCAGGACCCCTCTCCCGCCGGGATGGGCTCCTCACCATGCTCCCCGGCCCACCACCT
GTGTATGCAGCTGACAGCAACAGCCCCCTCCTCCGCACCAAGGACCCCCACACCCGTGCCACCCGCACTA
AGCCCTGTGGCCTGCCCCCAGAGGCTGCCGAAGGCCCTGAGGTGCATCCAAACCCTCTGCTGTGGATGCC
CCCACCCACCCGTATCCCCTCGGCTGGTGAACGCAGTGGCCACAAGAACCTGGCTCTGGAGGGGCTGCGG
GACTGGTACATCCGGAACTCGGGACTGGCTGCGGGGCCCCAGCGCCGGCCTGTGCTCCCTTCCGTGGGCC
CGCCACACCCACCCTTCCTCCATGCCCGCTGCTATGAGGTGGGCCAGGCGCTGTACGGGGCCCCCAGCCA
GGCGCCACTCCCACACTCGAGGAGTTTCACGGCGCCCCCTGTCTCTGGCAGGTATGGGGGGTGCTTTTAC
TGA

Translation (630 aa):
MEVKGQLISSPTFNAPAALFGEAAPQVKSERLRGLLDRQRTLQEALSLKLQELRKVCLQEAELTGQLPPE
CPLEPGERPQLVRRRPPTARAYPPPHPNQAHHSLCPAEELALEALEREVSVQQQIAAAARRLALAPDLST
EQRRRRRQVQADALRRLHELEEQLRDVRARLGLPVLPLPQPLPLSTGSVITTQGVCLGMRLAQLSQEDVV
LHSESSSLSESGASHDNEEPHGCFSLAERPSPPKAWDQLRAVSGGSPERRTPWKPPPSDLYGDLKSRRNS
VASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGPQLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASL
FVARTRRSNSSEALLVDRAAGGGAGSPPAPLAPSASGPPVCKSSEVLYERPQPTPAFSSRTAGPPDPPRA
ARPSSAAPASRGAPRLPPVCGDFLLDYSLDRGLPRSGGGTGWGELPPAAEVPGPLSRRDGLLTMLPGPPP
VYAADSNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGHKNLALEGLR
DWYIRNSGLAAGPQRRPVLPSVGPPHPPFLHARCYEVGQALYGAPSQAPLPHSRSFTAPPVSGRYGGCFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH